miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 90223 0.7 0.349728
Target:  5'- -aCGCCGgccgagaucgcguCGCGGcUGGCCaGCGCCc -3'
miRNA:   3'- caGCGGCau-----------GCGCC-ACCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 129004 0.7 0.346794
Target:  5'- -cCGCCGUgaugcccuucaGCGCGGcgucGGCCGcGCGCgCGu -3'
miRNA:   3'- caGCGGCA-----------UGCGCCa---CCGGC-CGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 119745 0.7 0.346794
Target:  5'- -cCGCCGUggACcggcucugGCGGacgUGGCCGGCGCgCGc -3'
miRNA:   3'- caGCGGCA--UG--------CGCC---ACCGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 84353 0.7 0.318424
Target:  5'- cGUCGCCGgccCGCGGcGGUgaucgcgaucgCGGCGCgCGg -3'
miRNA:   3'- -CAGCGGCau-GCGCCaCCG-----------GCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 4220 0.69 0.376927
Target:  5'- --gGCCGggGCGCGGgcgGGCgCGGgcaGCCGg -3'
miRNA:   3'- cagCGGCa-UGCGCCa--CCG-GCCg--CGGC- -5'
29373 5' -64.1 NC_006151.1 + 129528 0.69 0.376927
Target:  5'- -cCGCCG-ACGgGGgGGcCCGGgGCCGc -3'
miRNA:   3'- caGCGGCaUGCgCCaCC-GGCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 18742 0.69 0.389465
Target:  5'- cGUCGCCGccgccggggccccACGgGGUgcccggggcccgGGCCGGgGCCGu -3'
miRNA:   3'- -CAGCGGCa------------UGCgCCA------------CCGGCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 60632 0.69 0.392642
Target:  5'- cGUCGUCGggGCGgGGcucccGGCCcGCGCCGc -3'
miRNA:   3'- -CAGCGGCa-UGCgCCa----CCGGcCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 98942 0.69 0.369231
Target:  5'- uUCGCCGaggcgGCGCGGgccgUGGacgaggCGGCGCUGg -3'
miRNA:   3'- cAGCGGCa----UGCGCC----ACCg-----GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 13178 0.69 0.376927
Target:  5'- gGUCGCCGcgGCcgucuCGG-GGCCcgcGGCGCCGc -3'
miRNA:   3'- -CAGCGGCa-UGc----GCCaCCGG---CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 97990 0.69 0.392642
Target:  5'- cUUGCCGg--GCGGcgUGGCCgcguaggcGGCGCCGg -3'
miRNA:   3'- cAGCGGCaugCGCC--ACCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 3669 0.69 0.369231
Target:  5'- cUCGCCGUccccgGgGCGGcgGGCCccgGGCGCgCGg -3'
miRNA:   3'- cAGCGGCA-----UgCGCCa-CCGG---CCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 135360 0.69 0.369231
Target:  5'- --aGCCGccGCGCGuUGGCCGcguGCGCCGc -3'
miRNA:   3'- cagCGGCa-UGCGCcACCGGC---CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 40131 0.69 0.369231
Target:  5'- cGUCGgCGUcCGCGGcggcgacGGCCGGCcCCGc -3'
miRNA:   3'- -CAGCgGCAuGCGCCa------CCGGCCGcGGC- -5'
29373 5' -64.1 NC_006151.1 + 20443 0.69 0.392642
Target:  5'- uUCGUCGga-GCGGggcucggGGgUGGCGCCGg -3'
miRNA:   3'- cAGCGGCaugCGCCa------CCgGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 122954 0.69 0.376927
Target:  5'- -gCGCCGcgggggGCGCGGacGCCGGCGaCGg -3'
miRNA:   3'- caGCGGCa-----UGCGCCacCGGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 131763 0.69 0.384731
Target:  5'- cGUCGCgGUcgcgacCGCGGccGCgGGCGCCGc -3'
miRNA:   3'- -CAGCGgCAu-----GCGCCacCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 106319 0.69 0.376927
Target:  5'- -aCGCUGgACGCGGUgcuGGaCCGcGCGCUGg -3'
miRNA:   3'- caGCGGCaUGCGCCA---CC-GGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 84616 0.69 0.376927
Target:  5'- -gCGCCGccGCGCGGccGCCgcGGCGCUGg -3'
miRNA:   3'- caGCGGCa-UGCGCCacCGG--CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 5074 0.69 0.384731
Target:  5'- --gGCCGagggcCGCGGggccgcGGCgGGCGCCGg -3'
miRNA:   3'- cagCGGCau---GCGCCa-----CCGgCCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.