miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 135360 0.69 0.369231
Target:  5'- --aGCCGccGCGCGuUGGCCGcguGCGCCGc -3'
miRNA:   3'- cagCGGCa-UGCGCcACCGGC---CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 3669 0.69 0.369231
Target:  5'- cUCGCCGUccccgGgGCGGcgGGCCccgGGCGCgCGg -3'
miRNA:   3'- cAGCGGCA-----UgCGCCa-CCGG---CCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 84616 0.69 0.376927
Target:  5'- -gCGCCGccGCGCGGccGCCgcGGCGCUGg -3'
miRNA:   3'- caGCGGCa-UGCGCCacCGG--CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 129528 0.69 0.376927
Target:  5'- -cCGCCG-ACGgGGgGGcCCGGgGCCGc -3'
miRNA:   3'- caGCGGCaUGCgCCaCC-GGCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 122954 0.69 0.376927
Target:  5'- -gCGCCGcgggggGCGCGGacGCCGGCGaCGg -3'
miRNA:   3'- caGCGGCa-----UGCGCCacCGGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 122453 0.69 0.392642
Target:  5'- -gCGgCGUccACgGCGGcGGCgGGCGCCGa -3'
miRNA:   3'- caGCgGCA--UG-CGCCaCCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 20443 0.69 0.392642
Target:  5'- uUCGUCGga-GCGGggcucggGGgUGGCGCCGg -3'
miRNA:   3'- cAGCGGCaugCGCCa------CCgGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 97990 0.69 0.392642
Target:  5'- cUUGCCGg--GCGGcgUGGCCgcguaggcGGCGCCGg -3'
miRNA:   3'- cAGCGGCaugCGCC--ACCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 82350 0.69 0.360889
Target:  5'- -cCGCCGc-CGUGGUGuacgugcGCCGGaCGCCGg -3'
miRNA:   3'- caGCGGCauGCGCCAC-------CGGCC-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 75445 0.69 0.400657
Target:  5'- -cUGCCGgcgugGCGCGcGUagcGGUCGGCgGCCGg -3'
miRNA:   3'- caGCGGCa----UGCGC-CA---CCGGCCG-CGGC- -5'
29373 5' -64.1 NC_006151.1 + 122217 0.69 0.400657
Target:  5'- --aGCCGUGCGCGGUGuGCUucgaGGaGCUGu -3'
miRNA:   3'- cagCGGCAUGCGCCAC-CGG----CCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 4220 0.69 0.376927
Target:  5'- --gGCCGggGCGCGGgcgGGCgCGGgcaGCCGg -3'
miRNA:   3'- cagCGGCa-UGCGCCa--CCG-GCCg--CGGC- -5'
29373 5' -64.1 NC_006151.1 + 40131 0.69 0.369231
Target:  5'- cGUCGgCGUcCGCGGcggcgacGGCCGGCcCCGc -3'
miRNA:   3'- -CAGCgGCAuGCGCCa------CCGGCCGcGGC- -5'
29373 5' -64.1 NC_006151.1 + 120570 0.69 0.369231
Target:  5'- --gGCCGUgaaGCGCuucucGGUGGacuaCGGCGCCa -3'
miRNA:   3'- cagCGGCA---UGCG-----CCACCg---GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 106661 0.69 0.392642
Target:  5'- -gCGCaCGUGCGCGa-GGCCGcggcgcucggcGCGCCGg -3'
miRNA:   3'- caGCG-GCAUGCGCcaCCGGC-----------CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 5689 0.68 0.43289
Target:  5'- -cCGCCGUGCcggcgcuGCGGccaccgcugcUGGCUgugcugguGGCGCCGg -3'
miRNA:   3'- caGCGGCAUG-------CGCC----------ACCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 109735 0.68 0.425317
Target:  5'- cUCGCCGcuggagcggAUGCcGUGGCCGcCGCCGu -3'
miRNA:   3'- cAGCGGCa--------UGCGcCACCGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 103526 0.68 0.425317
Target:  5'- -aCGuCCGaccccgGCGCGcUGGUgGGCGCCGg -3'
miRNA:   3'- caGC-GGCa-----UGCGCcACCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 6403 0.68 0.425317
Target:  5'- -gCGCCGaGCGCGGaGaGCgGGCGgCGg -3'
miRNA:   3'- caGCGGCaUGCGCCaC-CGgCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 55882 0.68 0.425317
Target:  5'- -gCGCUGU-CGCGGcGGaCGuGCGCCGg -3'
miRNA:   3'- caGCGGCAuGCGCCaCCgGC-CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.