miRNA display CGI


Results 121 - 140 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 56359 0.68 0.45086
Target:  5'- -cCGCCG-GCGCGGaaGCuaCGGCGCCu -3'
miRNA:   3'- caGCGGCaUGCGCCacCG--GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 137035 0.68 0.45086
Target:  5'- -cUGCCGgACGC-GUGccccCCGGCGCCGg -3'
miRNA:   3'- caGCGGCaUGCGcCACc---GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 116977 0.68 0.45086
Target:  5'- cGUCGCUGgACGUGaG-GcGCUGGUGCCGc -3'
miRNA:   3'- -CAGCGGCaUGCGC-CaC-CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 6403 0.68 0.425317
Target:  5'- -gCGCCGaGCGCGGaGaGCgGGCGgCGg -3'
miRNA:   3'- caGCGGCaUGCGCCaC-CGgCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 64954 0.68 0.408776
Target:  5'- --gGCCGcGCuGCGGgcgcaGGCCGaGCGCCa -3'
miRNA:   3'- cagCGGCaUG-CGCCa----CCGGC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 19297 0.68 0.416996
Target:  5'- --gGCCagcgGCGCGGgcGGCCGGuCGCCc -3'
miRNA:   3'- cagCGGca--UGCGCCa-CCGGCC-GCGGc -5'
29373 5' -64.1 NC_006151.1 + 125532 0.68 0.442251
Target:  5'- cUCGCgGUGCGUGGaGGUgcgCGGCGgCGu -3'
miRNA:   3'- cAGCGgCAUGCGCCaCCG---GCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 4382 0.68 0.442251
Target:  5'- gGUCGCCuccccgGCGCGGgGGUccgCGGCGCgGc -3'
miRNA:   3'- -CAGCGGca----UGCGCCaCCG---GCCGCGgC- -5'
29373 5' -64.1 NC_006151.1 + 50010 0.68 0.433736
Target:  5'- -gCGCCGcgcGCGCGGcccGCgCGGCGCCc -3'
miRNA:   3'- caGCGGCa--UGCGCCac-CG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 22085 0.68 0.433736
Target:  5'- -gCGCgGUACGUGGgccGCCGGUggGCCa -3'
miRNA:   3'- caGCGgCAUGCGCCac-CGGCCG--CGGc -5'
29373 5' -64.1 NC_006151.1 + 67978 0.68 0.433736
Target:  5'- -aCGCaGU-CGCGGcGGCCcgccGGCGCCGc -3'
miRNA:   3'- caGCGgCAuGCGCCaCCGG----CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 5689 0.68 0.43289
Target:  5'- -cCGCCGUGCcggcgcuGCGGccaccgcugcUGGCUgugcugguGGCGCCGg -3'
miRNA:   3'- caGCGGCAUG-------CGCC----------ACCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 109735 0.68 0.425317
Target:  5'- cUCGCCGcuggagcggAUGCcGUGGCCGcCGCCGu -3'
miRNA:   3'- cAGCGGCa--------UGCGcCACCGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 103526 0.68 0.425317
Target:  5'- -aCGuCCGaccccgGCGCGcUGGUgGGCGCCGg -3'
miRNA:   3'- caGC-GGCa-----UGCGCcACCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 122482 0.68 0.442251
Target:  5'- --gGCCGgggACGCGGgcgagacggcGcGCCGGCGCgCGg -3'
miRNA:   3'- cagCGGCa--UGCGCCa---------C-CGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 55882 0.68 0.425317
Target:  5'- -gCGCUGU-CGCGGcGGaCGuGCGCCGg -3'
miRNA:   3'- caGCGGCAuGCGCCaCCgGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 99575 0.68 0.425317
Target:  5'- -gCGCUGcUGCGCGaGguggcggcGGCCGaGCGCCGc -3'
miRNA:   3'- caGCGGC-AUGCGC-Ca-------CCGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 131712 0.68 0.417824
Target:  5'- cGUCGCgGgggaugaggugguagGCGgGGUGGCgGGC-CCGg -3'
miRNA:   3'- -CAGCGgCa--------------UGCgCCACCGgCCGcGGC- -5'
29373 5' -64.1 NC_006151.1 + 105286 0.68 0.416996
Target:  5'- --gGCgCGcGCGCGGccGcGCCGGCGCCu -3'
miRNA:   3'- cagCG-GCaUGCGCCa-C-CGGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 102874 0.68 0.416996
Target:  5'- cGUgGCCaacgcCGCGGUGGCgGGCcugcGCCGc -3'
miRNA:   3'- -CAgCGGcau--GCGCCACCGgCCG----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.