miRNA display CGI


Results 141 - 160 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 5689 0.68 0.43289
Target:  5'- -cCGCCGUGCcggcgcuGCGGccaccgcugcUGGCUgugcugguGGCGCCGg -3'
miRNA:   3'- caGCGGCAUG-------CGCC----------ACCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 67978 0.68 0.433736
Target:  5'- -aCGCaGU-CGCGGcGGCCcgccGGCGCCGc -3'
miRNA:   3'- caGCGgCAuGCGCCaCCGG----CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 105286 0.68 0.416996
Target:  5'- --gGCgCGcGCGCGGccGcGCCGGCGCCu -3'
miRNA:   3'- cagCG-GCaUGCGCCa-C-CGGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 4382 0.68 0.442251
Target:  5'- gGUCGCCuccccgGCGCGGgGGUccgCGGCGCgGc -3'
miRNA:   3'- -CAGCGGca----UGCGCCaCCG---GCCGCGgC- -5'
29373 5' -64.1 NC_006151.1 + 50010 0.68 0.433736
Target:  5'- -gCGCCGcgcGCGCGGcccGCgCGGCGCCc -3'
miRNA:   3'- caGCGGCa--UGCGCCac-CG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 105685 0.68 0.408776
Target:  5'- -aCGgCG-GCGCGG-GGCCGaCGCCGg -3'
miRNA:   3'- caGCgGCaUGCGCCaCCGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 55466 0.68 0.408776
Target:  5'- -cCGCCGggggGCGCGcgc-CCGGCGCCGc -3'
miRNA:   3'- caGCGGCa---UGCGCcaccGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 59143 0.68 0.408776
Target:  5'- -gCGcCCGcGgGCGGguccaGGCCGGCGUCGc -3'
miRNA:   3'- caGC-GGCaUgCGCCa----CCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 64954 0.68 0.408776
Target:  5'- --gGCCGcGCuGCGGgcgcaGGCCGaGCGCCa -3'
miRNA:   3'- cagCGGCaUG-CGCCa----CCGGC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 19297 0.68 0.416996
Target:  5'- --gGCCagcgGCGCGGgcGGCCGGuCGCCc -3'
miRNA:   3'- cagCGGca--UGCGCCa-CCGGCC-GCGGc -5'
29373 5' -64.1 NC_006151.1 + 102874 0.68 0.416996
Target:  5'- cGUgGCCaacgcCGCGGUGGCgGGCcugcGCCGc -3'
miRNA:   3'- -CAgCGGcau--GCGCCACCGgCCG----CGGC- -5'
29373 5' -64.1 NC_006151.1 + 73112 0.67 0.513506
Target:  5'- cUCGCCGgcggcgcgcccGCGCGGguuGCaCGcGCGCCGa -3'
miRNA:   3'- cAGCGGCa----------UGCGCCac-CG-GC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 54694 0.67 0.513506
Target:  5'- cGUCGCCGgcaGCGUGcugGGCCaGgGCCu -3'
miRNA:   3'- -CAGCGGCa--UGCGCca-CCGGcCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 128795 0.67 0.509825
Target:  5'- gGUCGCCucggcgagcgcgGCGCGcGUGGCCccguacgcGGCGCUc -3'
miRNA:   3'- -CAGCGGca----------UGCGC-CACCGG--------CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 3941 0.67 0.507988
Target:  5'- --gGCCGgGCGCGGgcuccgcgggcccgGGCCGcGCGgCGg -3'
miRNA:   3'- cagCGGCaUGCGCCa-------------CCGGC-CGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 68281 0.67 0.504323
Target:  5'- -gCGCCGgGCGCcacGGcGGCCaGGCGCgCGc -3'
miRNA:   3'- caGCGGCaUGCG---CCaCCGG-CCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 126049 0.67 0.504323
Target:  5'- -cCGCCGUcgGCaaGGUGGUCcugGGUGCCa -3'
miRNA:   3'- caGCGGCA--UGcgCCACCGG---CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 99829 0.67 0.504323
Target:  5'- uUCGUCGUGacgGCcGUGGCCGaCGCCu -3'
miRNA:   3'- cAGCGGCAUg--CGcCACCGGCcGCGGc -5'
29373 5' -64.1 NC_006151.1 + 62431 0.67 0.504323
Target:  5'- aUCGUCGUGCGCc-UGGUCcGCGCCu -3'
miRNA:   3'- cAGCGGCAUGCGccACCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 56309 0.67 0.504323
Target:  5'- -aCGCC--GCGCGGUgccugagccugGGCCGGUgGCUGg -3'
miRNA:   3'- caGCGGcaUGCGCCA-----------CCGGCCG-CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.