Results 81 - 100 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29373 | 5' | -64.1 | NC_006151.1 | + | 90223 | 0.7 | 0.349728 |
Target: 5'- -aCGCCGgccgagaucgcguCGCGGcUGGCCaGCGCCc -3' miRNA: 3'- caGCGGCau-----------GCGCC-ACCGGcCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 36519 | 0.7 | 0.354163 |
Target: 5'- --gGCCGgcgGCGCGGccucGGaccCCGGCGCCa -3' miRNA: 3'- cagCGGCa--UGCGCCa---CC---GGCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 75217 | 0.7 | 0.354163 |
Target: 5'- -gCGUCGggGCGCGcGUcGGCCacguaGGCGCCGa -3' miRNA: 3'- caGCGGCa-UGCGC-CA-CCGG-----CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 83788 | 0.7 | 0.357141 |
Target: 5'- -cCGCCGaGCGCcaucacccgggcaguGGUGcucuuGCCGGUGCCGa -3' miRNA: 3'- caGCGGCaUGCG---------------CCAC-----CGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 82350 | 0.69 | 0.360889 |
Target: 5'- -cCGCCGc-CGUGGUGuacgugcGCCGGaCGCCGg -3' miRNA: 3'- caGCGGCauGCGCCAC-------CGGCC-GCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 71093 | 0.69 | 0.361642 |
Target: 5'- -gCGCCGcggGCGCGG-GcGCCGuGCGCUa -3' miRNA: 3'- caGCGGCa--UGCGCCaC-CGGC-CGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 71972 | 0.69 | 0.361642 |
Target: 5'- uGUCGCgGUGCgGCGGgGGCagcugguaGCGCCGg -3' miRNA: 3'- -CAGCGgCAUG-CGCCaCCGgc------CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 108712 | 0.69 | 0.361642 |
Target: 5'- -cCcCCGggaGUGGUGGCCaGCGCCGa -3' miRNA: 3'- caGcGGCaugCGCCACCGGcCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 86617 | 0.69 | 0.366182 |
Target: 5'- aGUCGCCGgaccgcgaGCGCGuGUGGCacaugagcgaggaGGCGCUc -3' miRNA: 3'- -CAGCGGCa-------UGCGC-CACCGg------------CCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 40131 | 0.69 | 0.369231 |
Target: 5'- cGUCGgCGUcCGCGGcggcgacGGCCGGCcCCGc -3' miRNA: 3'- -CAGCgGCAuGCGCCa------CCGGCCGcGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 3669 | 0.69 | 0.369231 |
Target: 5'- cUCGCCGUccccgGgGCGGcgGGCCccgGGCGCgCGg -3' miRNA: 3'- cAGCGGCA-----UgCGCCa-CCGG---CCGCG-GC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 135360 | 0.69 | 0.369231 |
Target: 5'- --aGCCGccGCGCGuUGGCCGcguGCGCCGc -3' miRNA: 3'- cagCGGCa-UGCGCcACCGGC---CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 98942 | 0.69 | 0.369231 |
Target: 5'- uUCGCCGaggcgGCGCGGgccgUGGacgaggCGGCGCUGg -3' miRNA: 3'- cAGCGGCa----UGCGCC----ACCg-----GCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 120570 | 0.69 | 0.369231 |
Target: 5'- --gGCCGUgaaGCGCuucucGGUGGacuaCGGCGCCa -3' miRNA: 3'- cagCGGCA---UGCG-----CCACCg---GCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 89723 | 0.69 | 0.369231 |
Target: 5'- -gCGCCGgccgcggcCGCGGUGGUgGGCGagaCGa -3' miRNA: 3'- caGCGGCau------GCGCCACCGgCCGCg--GC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 13178 | 0.69 | 0.376927 |
Target: 5'- gGUCGCCGcgGCcgucuCGG-GGCCcgcGGCGCCGc -3' miRNA: 3'- -CAGCGGCa-UGc----GCCaCCGG---CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 84616 | 0.69 | 0.376927 |
Target: 5'- -gCGCCGccGCGCGGccGCCgcGGCGCUGg -3' miRNA: 3'- caGCGGCa-UGCGCCacCGG--CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 106319 | 0.69 | 0.376927 |
Target: 5'- -aCGCUGgACGCGGUgcuGGaCCGcGCGCUGg -3' miRNA: 3'- caGCGGCaUGCGCCA---CC-GGC-CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 129528 | 0.69 | 0.376927 |
Target: 5'- -cCGCCG-ACGgGGgGGcCCGGgGCCGc -3' miRNA: 3'- caGCGGCaUGCgCCaCC-GGCCgCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 122954 | 0.69 | 0.376927 |
Target: 5'- -gCGCCGcgggggGCGCGGacGCCGGCGaCGg -3' miRNA: 3'- caGCGGCa-----UGCGCCacCGGCCGCgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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