miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 84616 0.69 0.376927
Target:  5'- -gCGCCGccGCGCGGccGCCgcGGCGCUGg -3'
miRNA:   3'- caGCGGCa-UGCGCCacCGG--CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 106319 0.69 0.376927
Target:  5'- -aCGCUGgACGCGGUgcuGGaCCGcGCGCUGg -3'
miRNA:   3'- caGCGGCaUGCGCCA---CC-GGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 131763 0.69 0.384731
Target:  5'- cGUCGCgGUcgcgacCGCGGccGCgGGCGCCGc -3'
miRNA:   3'- -CAGCGgCAu-----GCGCCacCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 5074 0.69 0.384731
Target:  5'- --gGCCGagggcCGCGGggccgcGGCgGGCGCCGg -3'
miRNA:   3'- cagCGGCau---GCGCCa-----CCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 18742 0.69 0.389465
Target:  5'- cGUCGCCGccgccggggccccACGgGGUgcccggggcccgGGCCGGgGCCGu -3'
miRNA:   3'- -CAGCGGCa------------UGCgCCA------------CCGGCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 96377 0.69 0.392642
Target:  5'- -cCGCCuccacgcgcGCGCGGU-GCCGGCGCaCGg -3'
miRNA:   3'- caGCGGca-------UGCGCCAcCGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 97990 0.69 0.392642
Target:  5'- cUUGCCGg--GCGGcgUGGCCgcguaggcGGCGCCGg -3'
miRNA:   3'- cAGCGGCaugCGCC--ACCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 60632 0.69 0.392642
Target:  5'- cGUCGUCGggGCGgGGcucccGGCCcGCGCCGc -3'
miRNA:   3'- -CAGCGGCa-UGCgCCa----CCGGcCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 20443 0.69 0.392642
Target:  5'- uUCGUCGga-GCGGggcucggGGgUGGCGCCGg -3'
miRNA:   3'- cAGCGGCaugCGCCa------CCgGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 122453 0.69 0.392642
Target:  5'- -gCGgCGUccACgGCGGcGGCgGGCGCCGa -3'
miRNA:   3'- caGCgGCA--UG-CGCCaCCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 106661 0.69 0.392642
Target:  5'- -gCGCaCGUGCGCGa-GGCCGcggcgcucggcGCGCCGg -3'
miRNA:   3'- caGCG-GCAUGCGCcaCCGGC-----------CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 75445 0.69 0.400657
Target:  5'- -cUGCCGgcgugGCGCGcGUagcGGUCGGCgGCCGg -3'
miRNA:   3'- caGCGGCa----UGCGC-CA---CCGGCCG-CGGC- -5'
29373 5' -64.1 NC_006151.1 + 122217 0.69 0.400657
Target:  5'- --aGCCGUGCGCGGUGuGCUucgaGGaGCUGu -3'
miRNA:   3'- cagCGGCAUGCGCCAC-CGG----CCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 82587 0.69 0.400657
Target:  5'- cGUCGCCGaccaggACGaacaGGgugGGCCcgcgcgcgGGCGCCGc -3'
miRNA:   3'- -CAGCGGCa-----UGCg---CCa--CCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 92179 0.69 0.400657
Target:  5'- -gCGCCGacgGCGaCGG-GGCCGccgacGCGCCGc -3'
miRNA:   3'- caGCGGCa--UGC-GCCaCCGGC-----CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 55466 0.68 0.408776
Target:  5'- -cCGCCGggggGCGCGcgc-CCGGCGCCGc -3'
miRNA:   3'- caGCGGCa---UGCGCcaccGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 105685 0.68 0.408776
Target:  5'- -aCGgCG-GCGCGG-GGCCGaCGCCGg -3'
miRNA:   3'- caGCgGCaUGCGCCaCCGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 64954 0.68 0.408776
Target:  5'- --gGCCGcGCuGCGGgcgcaGGCCGaGCGCCa -3'
miRNA:   3'- cagCGGCaUG-CGCCa----CCGGC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 59143 0.68 0.408776
Target:  5'- -gCGcCCGcGgGCGGguccaGGCCGGCGUCGc -3'
miRNA:   3'- caGC-GGCaUgCGCCa----CCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 102874 0.68 0.416996
Target:  5'- cGUgGCCaacgcCGCGGUGGCgGGCcugcGCCGc -3'
miRNA:   3'- -CAgCGGcau--GCGCCACCGgCCG----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.