miRNA display CGI


Results 141 - 160 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 116977 0.68 0.45086
Target:  5'- cGUCGCUGgACGUGaG-GcGCUGGUGCCGc -3'
miRNA:   3'- -CAGCGGCaUGCGC-CaC-CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 43391 0.68 0.45086
Target:  5'- gGUgGCCGU-CGCucGUGGCCGGCaaagaugcgaagGCCa -3'
miRNA:   3'- -CAgCGGCAuGCGc-CACCGGCCG------------CGGc -5'
29373 5' -64.1 NC_006151.1 + 104330 0.68 0.456941
Target:  5'- -aCGCCGU-CGCGGcgcccgucaucgGGUcgcucuuCGGCGCCGa -3'
miRNA:   3'- caGCGGCAuGCGCCa-----------CCG-------GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 64491 0.68 0.45956
Target:  5'- -aCGCCcgcggGCGCGGgcGGCgGGCGCgCGc -3'
miRNA:   3'- caGCGGca---UGCGCCa-CCGgCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 20115 0.68 0.45956
Target:  5'- -gCGCCccgGCGaCGGggcuggggGGCgGGCGCCGc -3'
miRNA:   3'- caGCGGca-UGC-GCCa-------CCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 127436 0.68 0.45956
Target:  5'- -gCGCuCGUGCGCGagaGCCGGCGgCGc -3'
miRNA:   3'- caGCG-GCAUGCGCcacCGGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 123029 0.68 0.45956
Target:  5'- -aCGCCGUGgCGUGGgcggaccugccGGCCgcGGCGCUGc -3'
miRNA:   3'- caGCGGCAU-GCGCCa----------CCGG--CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 102356 0.68 0.45956
Target:  5'- cGUgGCCGgcgacgACGCGuccgcgcccGUGGCCaagcuGGCGCUGg -3'
miRNA:   3'- -CAgCGGCa-----UGCGC---------CACCGG-----CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 2108 0.68 0.45956
Target:  5'- --aGCgGgcCGCGG-GGCCGGCcgucGCCGc -3'
miRNA:   3'- cagCGgCauGCGCCaCCGGCCG----CGGC- -5'
29373 5' -64.1 NC_006151.1 + 38889 0.68 0.45956
Target:  5'- cUCGCCGccUACuGCccgcccgaGGUGGCCcGCGCCu -3'
miRNA:   3'- cAGCGGC--AUG-CG--------CCACCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 102110 0.68 0.45956
Target:  5'- gGUCG-CGUGCGCG--GGCCGGaGCCu -3'
miRNA:   3'- -CAGCgGCAUGCGCcaCCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 81734 0.67 0.466584
Target:  5'- cUCGCCGaagguccaggcgGCGCGGagcUGGUCcgcgGGCGCCa -3'
miRNA:   3'- cAGCGGCa-----------UGCGCC---ACCGG----CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 137601 0.67 0.468348
Target:  5'- gGUCGggaUCGgggGCGCGGgcggGGaccCCGGCGCCu -3'
miRNA:   3'- -CAGC---GGCa--UGCGCCa---CC---GGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 99973 0.67 0.468348
Target:  5'- cUCGCCGcgcuCGUGGcgGcGCUGGCGCgCGa -3'
miRNA:   3'- cAGCGGCau--GCGCCa-C-CGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 128551 0.67 0.468348
Target:  5'- -cCGCCG-GCGCGGU-GCCGcccaaagaGCGCCu -3'
miRNA:   3'- caGCGGCaUGCGCCAcCGGC--------CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 101577 0.67 0.474551
Target:  5'- cGUCGCgGgcUACGCcgccagcgagcuccGGUgGGCCGGgGCCu -3'
miRNA:   3'- -CAGCGgC--AUGCG--------------CCA-CCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 97799 0.67 0.477222
Target:  5'- -gCGCUcagGCGCGc-GGCCGuGCGCCGg -3'
miRNA:   3'- caGCGGca-UGCGCcaCCGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 134792 0.67 0.477222
Target:  5'- --gGCCuGUGaggcCGCGGcGGCCcGCGCCGg -3'
miRNA:   3'- cagCGG-CAU----GCGCCaCCGGcCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 136952 0.67 0.477222
Target:  5'- -gCGCCGUccuGCGCcgccugcuGGagcUGGCCGccGCGCCGg -3'
miRNA:   3'- caGCGGCA---UGCG--------CC---ACCGGC--CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 115203 0.67 0.477222
Target:  5'- -gCGCCGcggGCGCGcgcgcgaucGUGGCCGcugcCGCCGa -3'
miRNA:   3'- caGCGGCa--UGCGC---------CACCGGCc---GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.