miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 17711 0.67 0.504323
Target:  5'- -cUGCUGUguGCGCccgGGUGcGCCGGgGCCc -3'
miRNA:   3'- caGCGGCA--UGCG---CCAC-CGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 56309 0.67 0.504323
Target:  5'- -aCGCC--GCGCGGUgccugagccugGGCCGGUgGCUGg -3'
miRNA:   3'- caGCGGcaUGCGCCA-----------CCGGCCG-CGGC- -5'
29373 5' -64.1 NC_006151.1 + 62431 0.67 0.504323
Target:  5'- aUCGUCGUGCGCc-UGGUCcGCGCCu -3'
miRNA:   3'- cAGCGGCAUGCGccACCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 68281 0.67 0.504323
Target:  5'- -gCGCCGgGCGCcacGGcGGCCaGGCGCgCGc -3'
miRNA:   3'- caGCGGCaUGCG---CCaCCGG-CCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 99829 0.67 0.504323
Target:  5'- uUCGUCGUGacgGCcGUGGCCGaCGCCu -3'
miRNA:   3'- cAGCGGCAUg--CGcCACCGGCcGCGGc -5'
29373 5' -64.1 NC_006151.1 + 126049 0.67 0.504323
Target:  5'- -cCGCCGUcgGCaaGGUGGUCcugGGUGCCa -3'
miRNA:   3'- caGCGGCA--UGcgCCACCGG---CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 7711 0.67 0.504323
Target:  5'- -cCGCCGUcggAC-CGG-GGaCCGGCGaCCGg -3'
miRNA:   3'- caGCGGCA---UGcGCCaCC-GGCCGC-GGC- -5'
29373 5' -64.1 NC_006151.1 + 114842 0.67 0.501583
Target:  5'- -aCGCCGUGCGCgaccacguaggcggGGUccucGGCCaGGuCGCUGa -3'
miRNA:   3'- caGCGGCAUGCG--------------CCA----CCGG-CC-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 92538 0.67 0.498848
Target:  5'- -gCGCCGgACGUggacucggugcagcaGGUGGCCGaGuCGCUGg -3'
miRNA:   3'- caGCGGCaUGCG---------------CCACCGGC-C-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 88889 0.67 0.495213
Target:  5'- cUCGUCaaaGUACuCGG-GGUCGGCGUCGg -3'
miRNA:   3'- cAGCGG---CAUGcGCCaCCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 52875 0.67 0.495213
Target:  5'- cUCGCgGUAC-CGGUcGaaGGCGCCGu -3'
miRNA:   3'- cAGCGgCAUGcGCCAcCggCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 48885 0.67 0.486178
Target:  5'- --aGCCGUACGCGc--GCCuGCGCUGg -3'
miRNA:   3'- cagCGGCAUGCGCcacCGGcCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 114444 0.67 0.486178
Target:  5'- -cCGCC-UGCuCGG-GGCCuGCGCCGg -3'
miRNA:   3'- caGCGGcAUGcGCCaCCGGcCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 124075 0.67 0.486178
Target:  5'- --gGCCGUGCGCGc-GGCC-GCGaCCGa -3'
miRNA:   3'- cagCGGCAUGCGCcaCCGGcCGC-GGC- -5'
29373 5' -64.1 NC_006151.1 + 142314 0.67 0.486178
Target:  5'- -gCGCCGUAUG-GG-GGCCcgcgcgcucgcGGCGCCc -3'
miRNA:   3'- caGCGGCAUGCgCCaCCGG-----------CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 90720 0.67 0.486178
Target:  5'- -cCGCaggCGgcgGCGaCGGUGGCggCGGCGCCc -3'
miRNA:   3'- caGCG---GCa--UGC-GCCACCG--GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 98356 0.67 0.486178
Target:  5'- -cCGCgggCGUGCGCGGgcucugGGCgCGcGCGCUGc -3'
miRNA:   3'- caGCG---GCAUGCGCCa-----CCG-GC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 138720 0.67 0.486178
Target:  5'- -gCGCCGcGCGCGGgucgUGuaCGcGCGCCGc -3'
miRNA:   3'- caGCGGCaUGCGCC----ACcgGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 104180 0.67 0.486178
Target:  5'- -cCGCCGaGCGCGc--GCuCGGCGCCa -3'
miRNA:   3'- caGCGGCaUGCGCcacCG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 15038 0.67 0.485279
Target:  5'- -gUGCgCGUccacggcGCGCGG-GGCCccGGCGCCu -3'
miRNA:   3'- caGCG-GCA-------UGCGCCaCCGG--CCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.