Results 81 - 100 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29373 | 5' | -64.1 | NC_006151.1 | + | 52358 | 0.67 | 0.483483 |
Target: 5'- cGUCGUCGUccgccggcGCGCccccggggcccgcgGGggcGGCgGGCGCCGc -3' miRNA: 3'- -CAGCGGCA--------UGCG--------------CCa--CCGgCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 97799 | 0.67 | 0.477222 |
Target: 5'- -gCGCUcagGCGCGc-GGCCGuGCGCCGg -3' miRNA: 3'- caGCGGca-UGCGCcaCCGGC-CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 134792 | 0.67 | 0.477222 |
Target: 5'- --gGCCuGUGaggcCGCGGcGGCCcGCGCCGg -3' miRNA: 3'- cagCGG-CAU----GCGCCaCCGGcCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 136952 | 0.67 | 0.477222 |
Target: 5'- -gCGCCGUccuGCGCcgccugcuGGagcUGGCCGccGCGCCGg -3' miRNA: 3'- caGCGGCA---UGCG--------CC---ACCGGC--CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 115203 | 0.67 | 0.477222 |
Target: 5'- -gCGCCGcggGCGCGcgcgcgaucGUGGCCGcugcCGCCGa -3' miRNA: 3'- caGCGGCa--UGCGC---------CACCGGCc---GCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 139814 | 0.67 | 0.477222 |
Target: 5'- -cCGCCGUcuccgcgacgcACGCGcG-GGUCGGCGCg- -3' miRNA: 3'- caGCGGCA-----------UGCGC-CaCCGGCCGCGgc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 69443 | 0.67 | 0.477222 |
Target: 5'- -cCGCCGUucgcguccucGCGCGcc-GCgGGCGCCGg -3' miRNA: 3'- caGCGGCA----------UGCGCcacCGgCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 82844 | 0.67 | 0.477222 |
Target: 5'- cGUCGUCGUugccuccguCGCGGUcuccaucuGGCCgcGGCGCgGg -3' miRNA: 3'- -CAGCGGCAu--------GCGCCA--------CCGG--CCGCGgC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 101577 | 0.67 | 0.474551 |
Target: 5'- cGUCGCgGgcUACGCcgccagcgagcuccGGUgGGCCGGgGCCu -3' miRNA: 3'- -CAGCGgC--AUGCG--------------CCA-CCGGCCgCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 128551 | 0.67 | 0.468348 |
Target: 5'- -cCGCCG-GCGCGGU-GCCGcccaaagaGCGCCu -3' miRNA: 3'- caGCGGCaUGCGCCAcCGGC--------CGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 99973 | 0.67 | 0.468348 |
Target: 5'- cUCGCCGcgcuCGUGGcgGcGCUGGCGCgCGa -3' miRNA: 3'- cAGCGGCau--GCGCCa-C-CGGCCGCG-GC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 137601 | 0.67 | 0.468348 |
Target: 5'- gGUCGggaUCGgggGCGCGGgcggGGaccCCGGCGCCu -3' miRNA: 3'- -CAGC---GGCa--UGCGCCa---CC---GGCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 81734 | 0.67 | 0.466584 |
Target: 5'- cUCGCCGaagguccaggcgGCGCGGagcUGGUCcgcgGGCGCCa -3' miRNA: 3'- cAGCGGCa-----------UGCGCC---ACCGG----CCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 20115 | 0.68 | 0.45956 |
Target: 5'- -gCGCCccgGCGaCGGggcuggggGGCgGGCGCCGc -3' miRNA: 3'- caGCGGca-UGC-GCCa-------CCGgCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 38889 | 0.68 | 0.45956 |
Target: 5'- cUCGCCGccUACuGCccgcccgaGGUGGCCcGCGCCu -3' miRNA: 3'- cAGCGGC--AUG-CG--------CCACCGGcCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 102110 | 0.68 | 0.45956 |
Target: 5'- gGUCG-CGUGCGCG--GGCCGGaGCCu -3' miRNA: 3'- -CAGCgGCAUGCGCcaCCGGCCgCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 102356 | 0.68 | 0.45956 |
Target: 5'- cGUgGCCGgcgacgACGCGuccgcgcccGUGGCCaagcuGGCGCUGg -3' miRNA: 3'- -CAgCGGCa-----UGCGC---------CACCGG-----CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 123029 | 0.68 | 0.45956 |
Target: 5'- -aCGCCGUGgCGUGGgcggaccugccGGCCgcGGCGCUGc -3' miRNA: 3'- caGCGGCAU-GCGCCa----------CCGG--CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 127436 | 0.68 | 0.45956 |
Target: 5'- -gCGCuCGUGCGCGagaGCCGGCGgCGc -3' miRNA: 3'- caGCG-GCAUGCGCcacCGGCCGCgGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 2108 | 0.68 | 0.45956 |
Target: 5'- --aGCgGgcCGCGG-GGCCGGCcgucGCCGc -3' miRNA: 3'- cagCGgCauGCGCCaCCGGCCG----CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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