miRNA display CGI


Results 81 - 100 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 63164 0.66 0.533004
Target:  5'- -aCGCgGUACGgGGccuuggggcgcacggGGCCGGgcuCGCCGa -3'
miRNA:   3'- caGCGgCAUGCgCCa--------------CCGGCC---GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 63781 0.71 0.291834
Target:  5'- cGUCGCCagGCGgGGUcGGCCGuCGCCa -3'
miRNA:   3'- -CAGCGGcaUGCgCCA-CCGGCcGCGGc -5'
29373 5' -64.1 NC_006151.1 + 64491 0.68 0.45956
Target:  5'- -aCGCCcgcggGCGCGGgcGGCgGGCGCgCGc -3'
miRNA:   3'- caGCGGca---UGCGCCa-CCGgCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 64585 0.66 0.559396
Target:  5'- gGUCGUgcaCGUACGCcaGGcGGUacgccagCGGCGCCGc -3'
miRNA:   3'- -CAGCG---GCAUGCG--CCaCCG-------GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 64626 0.78 0.108072
Target:  5'- -cCGCCGgcCGCGG-GGCgCGGCGCCc -3'
miRNA:   3'- caGCGGCauGCGCCaCCG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 64763 0.74 0.198038
Target:  5'- -cCaCCGUGCGCGGgGGCUGGuUGCCGg -3'
miRNA:   3'- caGcGGCAUGCGCCaCCGGCC-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 64804 0.66 0.541442
Target:  5'- -aCGCCcu-CGCGGaaGCCGGCgGCCa -3'
miRNA:   3'- caGCGGcauGCGCCacCGGCCG-CGGc -5'
29373 5' -64.1 NC_006151.1 + 64954 0.68 0.408776
Target:  5'- --gGCCGcGCuGCGGgcgcaGGCCGaGCGCCa -3'
miRNA:   3'- cagCGGCaUG-CGCCa----CCGGC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 65773 0.73 0.222523
Target:  5'- cGUCGCCGccgGCGGcGGCgaUGGCGCCGc -3'
miRNA:   3'- -CAGCGGCaugCGCCaCCG--GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 66566 0.66 0.568913
Target:  5'- -cCGCCGUggacccggcgcucGCGCGcGcGGCCgaGGCGCuCGa -3'
miRNA:   3'- caGCGGCA-------------UGCGC-CaCCGG--CCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 67830 0.73 0.203214
Target:  5'- cGUCGUCGU-CGCGGgggcucagcagcccgGcgaGCCGGCGCCGa -3'
miRNA:   3'- -CAGCGGCAuGCGCCa--------------C---CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 67978 0.68 0.433736
Target:  5'- -aCGCaGU-CGCGGcGGCCcgccGGCGCCGc -3'
miRNA:   3'- caGCGgCAuGCGCCaCCGG----CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 68042 0.66 0.541442
Target:  5'- -cCGCCG-GCGCGGcgggcacgGGCuCGGCGaCGg -3'
miRNA:   3'- caGCGGCaUGCGCCa-------CCG-GCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 68281 0.67 0.504323
Target:  5'- -gCGCCGgGCGCcacGGcGGCCaGGCGCgCGc -3'
miRNA:   3'- caGCGGCaUGCG---CCaCCGG-CCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 68426 0.66 0.522756
Target:  5'- cUCGCCccgcuacACGCGGcGGCacaGGCGCuCGa -3'
miRNA:   3'- cAGCGGca-----UGCGCCaCCGg--CCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 69268 0.65 0.577512
Target:  5'- cUCGCCGgucugguaguggcgGCGCgccaccagggacacgGGccGCCGGCGCCa -3'
miRNA:   3'- cAGCGGCa-------------UGCG---------------CCacCGGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 69443 0.67 0.477222
Target:  5'- -cCGCCGUucgcguccucGCGCGcc-GCgGGCGCCGg -3'
miRNA:   3'- caGCGGCA----------UGCGCcacCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 69694 0.78 0.105421
Target:  5'- cUCGCCGU-CGaUGGUGGCCGcCGCCGg -3'
miRNA:   3'- cAGCGGCAuGC-GCCACCGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 69823 0.66 0.521828
Target:  5'- cUCGCCGUccacguuguaGCGCGuGcgGGCCGGCaggacucGUCGu -3'
miRNA:   3'- cAGCGGCA----------UGCGC-Ca-CCGGCCG-------CGGC- -5'
29373 5' -64.1 NC_006151.1 + 71093 0.69 0.361642
Target:  5'- -gCGCCGcggGCGCGG-GcGCCGuGCGCUa -3'
miRNA:   3'- caGCGGCa--UGCGCCaC-CGGC-CGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.