miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 71655 0.66 0.559396
Target:  5'- --gGCCGUcgaagaugcacacGCGCGccacgGGCCGcGUGCCGa -3'
miRNA:   3'- cagCGGCA-------------UGCGCca---CCGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 71758 0.66 0.532069
Target:  5'- -gCGCCGcGCGUGGUccugcGGCagCGGCGgCGg -3'
miRNA:   3'- caGCGGCaUGCGCCA-----CCG--GCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 71972 0.69 0.361642
Target:  5'- uGUCGCgGUGCgGCGGgGGCagcugguaGCGCCGg -3'
miRNA:   3'- -CAGCGgCAUG-CGCCaCCGgc------CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 73112 0.67 0.513506
Target:  5'- cUCGCCGgcggcgcgcccGCGCGGguuGCaCGcGCGCCGa -3'
miRNA:   3'- cAGCGGCa----------UGCGCCac-CG-GC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 73264 0.66 0.550869
Target:  5'- -gCGCC--AgGCGGUuGCCGGCGuuGa -3'
miRNA:   3'- caGCGGcaUgCGCCAcCGGCCGCggC- -5'
29373 5' -64.1 NC_006151.1 + 73688 0.66 0.550869
Target:  5'- cUCGUCG-GCGCGGcucUGcGCCGcGUGCUGg -3'
miRNA:   3'- cAGCGGCaUGCGCC---AC-CGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 73813 0.7 0.339534
Target:  5'- cGUCGCgCaugGCGCcgaGGUGGUCGGCGCa- -3'
miRNA:   3'- -CAGCG-Gca-UGCG---CCACCGGCCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 74869 0.7 0.318424
Target:  5'- -gCGCCGcgcacCGCGGccaccgUGGCCGGgGCCa -3'
miRNA:   3'- caGCGGCau---GCGCC------ACCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 75107 0.7 0.325349
Target:  5'- cGUUGCCGgGCGCcagcagcuggucGGcGGCCGGCGgCGc -3'
miRNA:   3'- -CAGCGGCaUGCG------------CCaCCGGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 75217 0.7 0.354163
Target:  5'- -gCGUCGggGCGCGcGUcGGCCacguaGGCGCCGa -3'
miRNA:   3'- caGCGGCa-UGCGC-CA-CCGG-----CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 75445 0.69 0.400657
Target:  5'- -cUGCCGgcgugGCGCGcGUagcGGUCGGCgGCCGg -3'
miRNA:   3'- caGCGGCa----UGCGC-CA---CCGGCCG-CGGC- -5'
29373 5' -64.1 NC_006151.1 + 75593 0.66 0.541442
Target:  5'- gGUCGCCGacgACGacgaGGUcGGCgCGcacgcGCGCCGa -3'
miRNA:   3'- -CAGCGGCa--UGCg---CCA-CCG-GC-----CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 75642 0.72 0.26108
Target:  5'- cUUGCCGU-CGuCGGgGGCCGGCucGCCGc -3'
miRNA:   3'- cAGCGGCAuGC-GCCaCCGGCCG--CGGC- -5'
29373 5' -64.1 NC_006151.1 + 77218 0.66 0.569867
Target:  5'- -gCGCCGccGCGUGuGUGcGCCgggaGGCGCCc -3'
miRNA:   3'- caGCGGCa-UGCGC-CAC-CGG----CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 81189 0.66 0.550869
Target:  5'- -cCGCCGaGCGUGuacgccgGGCCgcaguccgGGCGCCGg -3'
miRNA:   3'- caGCGGCaUGCGCca-----CCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 81344 0.7 0.346794
Target:  5'- cGUCGCCGccgccGCGCccgGGgccccGGCgGGCGCCa -3'
miRNA:   3'- -CAGCGGCa----UGCG---CCa----CCGgCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 81734 0.67 0.466584
Target:  5'- cUCGCCGaagguccaggcgGCGCGGagcUGGUCcgcgGGCGCCa -3'
miRNA:   3'- cAGCGGCa-----------UGCGCC---ACCGG----CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 81867 0.7 0.332386
Target:  5'- cGUCGCUcucgacGCGCaGGaGcGCCGGCGCCGa -3'
miRNA:   3'- -CAGCGGca----UGCG-CCaC-CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 82350 0.69 0.360889
Target:  5'- -cCGCCGc-CGUGGUGuacgugcGCCGGaCGCCGg -3'
miRNA:   3'- caGCGGCauGCGCCAC-------CGGCC-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 82587 0.69 0.400657
Target:  5'- cGUCGCCGaccaggACGaacaGGgugGGCCcgcgcgcgGGCGCCGc -3'
miRNA:   3'- -CAGCGGCa-----UGCg---CCa--CCGG--------CCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.