Results 121 - 140 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29373 | 5' | -64.1 | NC_006151.1 | + | 82844 | 0.67 | 0.477222 |
Target: 5'- cGUCGUCGUugccuccguCGCGGUcuccaucuGGCCgcGGCGCgGg -3' miRNA: 3'- -CAGCGGCAu--------GCGCCA--------CCGG--CCGCGgC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 82952 | 0.72 | 0.269416 |
Target: 5'- gGUCGCCGUACGCGGacuccgucaccuccaU-GCCGcGCGUCu -3' miRNA: 3'- -CAGCGGCAUGCGCC---------------AcCGGC-CGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 83788 | 0.7 | 0.357141 |
Target: 5'- -cCGCCGaGCGCcaucacccgggcaguGGUGcucuuGCCGGUGCCGa -3' miRNA: 3'- caGCGGCaUGCG---------------CCAC-----CGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 84353 | 0.7 | 0.318424 |
Target: 5'- cGUCGCCGgccCGCGGcGGUgaucgcgaucgCGGCGCgCGg -3' miRNA: 3'- -CAGCGGCau-GCGCCaCCG-----------GCCGCG-GC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 84616 | 0.69 | 0.376927 |
Target: 5'- -gCGCCGccGCGCGGccGCCgcGGCGCUGg -3' miRNA: 3'- caGCGGCa-UGCGCCacCGG--CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 85152 | 0.72 | 0.243926 |
Target: 5'- -cCG-CGUGCGgcaGGgGGCCGGCGCCGc -3' miRNA: 3'- caGCgGCAUGCg--CCaCCGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 85351 | 0.66 | 0.534875 |
Target: 5'- cUCGCCGcgcugGCGCGccugcgcGUGGUccccggcgcgaacguCGGCGCCa -3' miRNA: 3'- cAGCGGCa----UGCGC-------CACCG---------------GCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 86617 | 0.69 | 0.366182 |
Target: 5'- aGUCGCCGgaccgcgaGCGCGuGUGGCacaugagcgaggaGGCGCUc -3' miRNA: 3'- -CAGCGGCa-------UGCGC-CACCGg------------CCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 88889 | 0.67 | 0.495213 |
Target: 5'- cUCGUCaaaGUACuCGG-GGUCGGCGUCGg -3' miRNA: 3'- cAGCGG---CAUGcGCCaCCGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 89051 | 0.78 | 0.108072 |
Target: 5'- -gCGcCCGUGCGCGGUGGCCuuguCGCCGu -3' miRNA: 3'- caGC-GGCAUGCGCCACCGGcc--GCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 89260 | 0.7 | 0.318424 |
Target: 5'- -gCGCCGU-CGUGGUcGaCGGCGCCGc -3' miRNA: 3'- caGCGGCAuGCGCCAcCgGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 89723 | 0.69 | 0.369231 |
Target: 5'- -gCGCCGgccgcggcCGCGGUGGUgGGCGagaCGa -3' miRNA: 3'- caGCGGCau------GCGCCACCGgCCGCg--GC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 90223 | 0.7 | 0.349728 |
Target: 5'- -aCGCCGgccgagaucgcguCGCGGcUGGCCaGCGCCc -3' miRNA: 3'- caGCGGCau-----------GCGCC-ACCGGcCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 90720 | 0.67 | 0.486178 |
Target: 5'- -cCGCaggCGgcgGCGaCGGUGGCggCGGCGCCc -3' miRNA: 3'- caGCG---GCa--UGC-GCCACCG--GCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 91023 | 0.66 | 0.541442 |
Target: 5'- cGUCGCgGUcGCGCGccgGGaaggucacgaccCCGGCGCUGg -3' miRNA: 3'- -CAGCGgCA-UGCGCca-CC------------GGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 92179 | 0.69 | 0.400657 |
Target: 5'- -gCGCCGacgGCGaCGG-GGCCGccgacGCGCCGc -3' miRNA: 3'- caGCGGCa--UGC-GCCaCCGGC-----CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 92538 | 0.67 | 0.498848 |
Target: 5'- -gCGCCGgACGUggacucggugcagcaGGUGGCCGaGuCGCUGg -3' miRNA: 3'- caGCGGCaUGCG---------------CCACCGGC-C-GCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 92681 | 0.66 | 0.569867 |
Target: 5'- --gGCCGgggACGCGcGcucGCCGcGCGCCGa -3' miRNA: 3'- cagCGGCa--UGCGC-Cac-CGGC-CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 96077 | 0.66 | 0.522756 |
Target: 5'- --aGCCGcGCGCGc-GGCCGGCGaaGa -3' miRNA: 3'- cagCGGCaUGCGCcaCCGGCCGCggC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 96213 | 0.72 | 0.266414 |
Target: 5'- cGUCGCCGUG-GCGGcGGCCgcggcgaGGCGCa- -3' miRNA: 3'- -CAGCGGCAUgCGCCaCCGG-------CCGCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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