miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 102679 0.73 0.212433
Target:  5'- -aCGCCGUggACGCGGgGGCgccCGGCGCgGg -3'
miRNA:   3'- caGCGGCA--UGCGCCaCCG---GCCGCGgC- -5'
29373 5' -64.1 NC_006151.1 + 102505 0.68 0.442251
Target:  5'- -aCGCCGcgGCGCGGgaccCCGGCGgCGu -3'
miRNA:   3'- caGCGGCa-UGCGCCacc-GGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 102356 0.68 0.45956
Target:  5'- cGUgGCCGgcgacgACGCGuccgcgcccGUGGCCaagcuGGCGCUGg -3'
miRNA:   3'- -CAgCGGCa-----UGCGC---------CACCGG-----CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 102279 0.66 0.569867
Target:  5'- -cUGCCGgaGCGCGGcccGGCCGGggacuuuguggcCGCCa -3'
miRNA:   3'- caGCGGCa-UGCGCCa--CCGGCC------------GCGGc -5'
29373 5' -64.1 NC_006151.1 + 102110 0.68 0.45956
Target:  5'- gGUCG-CGUGCGCG--GGCCGGaGCCu -3'
miRNA:   3'- -CAGCgGCAUGCGCcaCCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 101770 0.71 0.279204
Target:  5'- -cCGCCG-ACGCGG-GGCCccGGgGCCa -3'
miRNA:   3'- caGCGGCaUGCGCCaCCGG--CCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 101699 0.72 0.255255
Target:  5'- --aGCCGUACGUGGagcGGgCGGUGCCc -3'
miRNA:   3'- cagCGGCAUGCGCCa--CCgGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 101577 0.67 0.474551
Target:  5'- cGUCGCgGgcUACGCcgccagcgagcuccGGUgGGCCGGgGCCu -3'
miRNA:   3'- -CAGCGgC--AUGCG--------------CCA-CCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 101426 0.7 0.332386
Target:  5'- -gCGCCGaguccuucACGCuggucGUGGUCGGCGCCGu -3'
miRNA:   3'- caGCGGCa-------UGCGc----CACCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 100655 0.71 0.304906
Target:  5'- -gCGCCGUcgacgaGCGCGGcGuGCUGGCGCuCGu -3'
miRNA:   3'- caGCGGCA------UGCGCCaC-CGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 100229 0.71 0.273054
Target:  5'- -gCGCCGUggccgagcGCGUGGUGGCgcuCGaGCGCCu -3'
miRNA:   3'- caGCGGCA--------UGCGCCACCG---GC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 100105 0.66 0.550869
Target:  5'- -gCGCCGcccuCGCuGGcGGCCaGCGCCu -3'
miRNA:   3'- caGCGGCau--GCG-CCaCCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 100062 0.71 0.273054
Target:  5'- --gGUCGUGCGCgcggccgccgaGGUGcucgaggcGCCGGCGCCGg -3'
miRNA:   3'- cagCGGCAUGCG-----------CCAC--------CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 99973 0.67 0.468348
Target:  5'- cUCGCCGcgcuCGUGGcgGcGCUGGCGCgCGa -3'
miRNA:   3'- cAGCGGCau--GCGCCa-C-CGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 99829 0.67 0.504323
Target:  5'- uUCGUCGUGacgGCcGUGGCCGaCGCCu -3'
miRNA:   3'- cAGCGGCAUg--CGcCACCGGCcGCGGc -5'
29373 5' -64.1 NC_006151.1 + 99575 0.68 0.425317
Target:  5'- -gCGCUGcUGCGCGaGguggcggcGGCCGaGCGCCGc -3'
miRNA:   3'- caGCGGC-AUGCGC-Ca-------CCGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 99148 0.66 0.532069
Target:  5'- --gGCCGUGCaC-GUGGCCGcCGCCGc -3'
miRNA:   3'- cagCGGCAUGcGcCACCGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 98942 0.69 0.369231
Target:  5'- uUCGCCGaggcgGCGCGGgccgUGGacgaggCGGCGCUGg -3'
miRNA:   3'- cAGCGGCa----UGCGCC----ACCg-----GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 98356 0.67 0.486178
Target:  5'- -cCGCgggCGUGCGCGGgcucugGGCgCGcGCGCUGc -3'
miRNA:   3'- caGCG---GCAUGCGCCa-----CCG-GC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 97990 0.69 0.392642
Target:  5'- cUUGCCGg--GCGGcgUGGCCgcguaggcGGCGCCGg -3'
miRNA:   3'- cAGCGGCaugCGCC--ACCGG--------CCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.