miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 97799 0.67 0.477222
Target:  5'- -gCGCUcagGCGCGc-GGCCGuGCGCCGg -3'
miRNA:   3'- caGCGGca-UGCGCcaCCGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 97336 0.66 0.522756
Target:  5'- gGUCGUUgaacagGUACGCGGggaaGGCCgcGGCGgCGg -3'
miRNA:   3'- -CAGCGG------CAUGCGCCa---CCGG--CCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 96578 0.66 0.532069
Target:  5'- -gCGCCGccuCGCGGc-GCgaGGCGCCGg -3'
miRNA:   3'- caGCGGCau-GCGCCacCGg-CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 96377 0.69 0.392642
Target:  5'- -cCGCCuccacgcgcGCGCGGU-GCCGGCGCaCGg -3'
miRNA:   3'- caGCGGca-------UGCGCCAcCGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 96213 0.72 0.266414
Target:  5'- cGUCGCCGUG-GCGGcGGCCgcggcgaGGCGCa- -3'
miRNA:   3'- -CAGCGGCAUgCGCCaCCGG-------CCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 96077 0.66 0.522756
Target:  5'- --aGCCGcGCGCGc-GGCCGGCGaaGa -3'
miRNA:   3'- cagCGGCaUGCGCcaCCGGCCGCggC- -5'
29373 5' -64.1 NC_006151.1 + 92681 0.66 0.569867
Target:  5'- --gGCCGgggACGCGcGcucGCCGcGCGCCGa -3'
miRNA:   3'- cagCGGCa--UGCGC-Cac-CGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 92538 0.67 0.498848
Target:  5'- -gCGCCGgACGUggacucggugcagcaGGUGGCCGaGuCGCUGg -3'
miRNA:   3'- caGCGGCaUGCG---------------CCACCGGC-C-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 92179 0.69 0.400657
Target:  5'- -gCGCCGacgGCGaCGG-GGCCGccgacGCGCCGc -3'
miRNA:   3'- caGCGGCa--UGC-GCCaCCGGC-----CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 91023 0.66 0.541442
Target:  5'- cGUCGCgGUcGCGCGccgGGaaggucacgaccCCGGCGCUGg -3'
miRNA:   3'- -CAGCGgCA-UGCGCca-CC------------GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 90720 0.67 0.486178
Target:  5'- -cCGCaggCGgcgGCGaCGGUGGCggCGGCGCCc -3'
miRNA:   3'- caGCG---GCa--UGC-GCCACCG--GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 90223 0.7 0.349728
Target:  5'- -aCGCCGgccgagaucgcguCGCGGcUGGCCaGCGCCc -3'
miRNA:   3'- caGCGGCau-----------GCGCC-ACCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 89723 0.69 0.369231
Target:  5'- -gCGCCGgccgcggcCGCGGUGGUgGGCGagaCGa -3'
miRNA:   3'- caGCGGCau------GCGCCACCGgCCGCg--GC- -5'
29373 5' -64.1 NC_006151.1 + 89260 0.7 0.318424
Target:  5'- -gCGCCGU-CGUGGUcGaCGGCGCCGc -3'
miRNA:   3'- caGCGGCAuGCGCCAcCgGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 89051 0.78 0.108072
Target:  5'- -gCGcCCGUGCGCGGUGGCCuuguCGCCGu -3'
miRNA:   3'- caGC-GGCAUGCGCCACCGGcc--GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 88889 0.67 0.495213
Target:  5'- cUCGUCaaaGUACuCGG-GGUCGGCGUCGg -3'
miRNA:   3'- cAGCGG---CAUGcGCCaCCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 86617 0.69 0.366182
Target:  5'- aGUCGCCGgaccgcgaGCGCGuGUGGCacaugagcgaggaGGCGCUc -3'
miRNA:   3'- -CAGCGGCa-------UGCGC-CACCGg------------CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 85351 0.66 0.534875
Target:  5'- cUCGCCGcgcugGCGCGccugcgcGUGGUccccggcgcgaacguCGGCGCCa -3'
miRNA:   3'- cAGCGGCa----UGCGC-------CACCG---------------GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 85152 0.72 0.243926
Target:  5'- -cCG-CGUGCGgcaGGgGGCCGGCGCCGc -3'
miRNA:   3'- caGCgGCAUGCg--CCaCCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 84616 0.69 0.376927
Target:  5'- -gCGCCGccGCGCGGccGCCgcGGCGCUGg -3'
miRNA:   3'- caGCGGCa-UGCGCCacCGG--CCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.