Results 121 - 140 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29373 | 5' | -64.1 | NC_006151.1 | + | 84353 | 0.7 | 0.318424 |
Target: 5'- cGUCGCCGgccCGCGGcGGUgaucgcgaucgCGGCGCgCGg -3' miRNA: 3'- -CAGCGGCau-GCGCCaCCG-----------GCCGCG-GC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 83788 | 0.7 | 0.357141 |
Target: 5'- -cCGCCGaGCGCcaucacccgggcaguGGUGcucuuGCCGGUGCCGa -3' miRNA: 3'- caGCGGCaUGCG---------------CCAC-----CGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 82952 | 0.72 | 0.269416 |
Target: 5'- gGUCGCCGUACGCGGacuccgucaccuccaU-GCCGcGCGUCu -3' miRNA: 3'- -CAGCGGCAUGCGCC---------------AcCGGC-CGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 82844 | 0.67 | 0.477222 |
Target: 5'- cGUCGUCGUugccuccguCGCGGUcuccaucuGGCCgcGGCGCgGg -3' miRNA: 3'- -CAGCGGCAu--------GCGCCA--------CCGG--CCGCGgC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 82587 | 0.69 | 0.400657 |
Target: 5'- cGUCGCCGaccaggACGaacaGGgugGGCCcgcgcgcgGGCGCCGc -3' miRNA: 3'- -CAGCGGCa-----UGCg---CCa--CCGG--------CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 82350 | 0.69 | 0.360889 |
Target: 5'- -cCGCCGc-CGUGGUGuacgugcGCCGGaCGCCGg -3' miRNA: 3'- caGCGGCauGCGCCAC-------CGGCC-GCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 81867 | 0.7 | 0.332386 |
Target: 5'- cGUCGCUcucgacGCGCaGGaGcGCCGGCGCCGa -3' miRNA: 3'- -CAGCGGca----UGCG-CCaC-CGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 81734 | 0.67 | 0.466584 |
Target: 5'- cUCGCCGaagguccaggcgGCGCGGagcUGGUCcgcgGGCGCCa -3' miRNA: 3'- cAGCGGCa-----------UGCGCC---ACCGG----CCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 81344 | 0.7 | 0.346794 |
Target: 5'- cGUCGCCGccgccGCGCccgGGgccccGGCgGGCGCCa -3' miRNA: 3'- -CAGCGGCa----UGCG---CCa----CCGgCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 81189 | 0.66 | 0.550869 |
Target: 5'- -cCGCCGaGCGUGuacgccgGGCCgcaguccgGGCGCCGg -3' miRNA: 3'- caGCGGCaUGCGCca-----CCGG--------CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 77218 | 0.66 | 0.569867 |
Target: 5'- -gCGCCGccGCGUGuGUGcGCCgggaGGCGCCc -3' miRNA: 3'- caGCGGCa-UGCGC-CAC-CGG----CCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 75642 | 0.72 | 0.26108 |
Target: 5'- cUUGCCGU-CGuCGGgGGCCGGCucGCCGc -3' miRNA: 3'- cAGCGGCAuGC-GCCaCCGGCCG--CGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 75593 | 0.66 | 0.541442 |
Target: 5'- gGUCGCCGacgACGacgaGGUcGGCgCGcacgcGCGCCGa -3' miRNA: 3'- -CAGCGGCa--UGCg---CCA-CCG-GC-----CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 75445 | 0.69 | 0.400657 |
Target: 5'- -cUGCCGgcgugGCGCGcGUagcGGUCGGCgGCCGg -3' miRNA: 3'- caGCGGCa----UGCGC-CA---CCGGCCG-CGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 75217 | 0.7 | 0.354163 |
Target: 5'- -gCGUCGggGCGCGcGUcGGCCacguaGGCGCCGa -3' miRNA: 3'- caGCGGCa-UGCGC-CA-CCGG-----CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 75107 | 0.7 | 0.325349 |
Target: 5'- cGUUGCCGgGCGCcagcagcuggucGGcGGCCGGCGgCGc -3' miRNA: 3'- -CAGCGGCaUGCG------------CCaCCGGCCGCgGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 74869 | 0.7 | 0.318424 |
Target: 5'- -gCGCCGcgcacCGCGGccaccgUGGCCGGgGCCa -3' miRNA: 3'- caGCGGCau---GCGCC------ACCGGCCgCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 73813 | 0.7 | 0.339534 |
Target: 5'- cGUCGCgCaugGCGCcgaGGUGGUCGGCGCa- -3' miRNA: 3'- -CAGCG-Gca-UGCG---CCACCGGCCGCGgc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 73688 | 0.66 | 0.550869 |
Target: 5'- cUCGUCG-GCGCGGcucUGcGCCGcGUGCUGg -3' miRNA: 3'- cAGCGGCaUGCGCC---AC-CGGC-CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 73264 | 0.66 | 0.550869 |
Target: 5'- -gCGCC--AgGCGGUuGCCGGCGuuGa -3' miRNA: 3'- caGCGGcaUgCGCCAcCGGCCGCggC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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