Results 101 - 120 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29373 | 5' | -64.1 | NC_006151.1 | + | 54694 | 0.67 | 0.513506 |
Target: 5'- cGUCGCCGgcaGCGUGcugGGCCaGgGCCu -3' miRNA: 3'- -CAGCGGCa--UGCGCca-CCGGcCgCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 128795 | 0.67 | 0.509825 |
Target: 5'- gGUCGCCucggcgagcgcgGCGCGcGUGGCCccguacgcGGCGCUc -3' miRNA: 3'- -CAGCGGca----------UGCGC-CACCGG--------CCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 3941 | 0.67 | 0.507988 |
Target: 5'- --gGCCGgGCGCGGgcuccgcgggcccgGGCCGcGCGgCGg -3' miRNA: 3'- cagCGGCaUGCGCCa-------------CCGGC-CGCgGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 7711 | 0.67 | 0.504323 |
Target: 5'- -cCGCCGUcggAC-CGG-GGaCCGGCGaCCGg -3' miRNA: 3'- caGCGGCA---UGcGCCaCC-GGCCGC-GGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 126049 | 0.67 | 0.504323 |
Target: 5'- -cCGCCGUcgGCaaGGUGGUCcugGGUGCCa -3' miRNA: 3'- caGCGGCA--UGcgCCACCGG---CCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 645 | 0.66 | 0.522756 |
Target: 5'- -aCGCCGgcuuccgggGCGCGGccggGGCgGGCuCCGc -3' miRNA: 3'- caGCGGCa--------UGCGCCa---CCGgCCGcGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 117099 | 0.66 | 0.522756 |
Target: 5'- -aCGCCGgccuCGUGcGUcaccaGGCCGGCGCa- -3' miRNA: 3'- caGCGGCau--GCGC-CA-----CCGGCCGCGgc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 54449 | 0.66 | 0.541442 |
Target: 5'- -gCGCC---CGCcGUGGCCGaGCGCCu -3' miRNA: 3'- caGCGGcauGCGcCACCGGC-CGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 64804 | 0.66 | 0.541442 |
Target: 5'- -aCGCCcu-CGCGGaaGCCGGCgGCCa -3' miRNA: 3'- caGCGGcauGCGCCacCGGCCG-CGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 57439 | 0.66 | 0.540502 |
Target: 5'- -aCGuCCGU-CGCGGcGGCCcccgcgucggccaGGUGCCGc -3' miRNA: 3'- caGC-GGCAuGCGCCaCCGG-------------CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 85351 | 0.66 | 0.534875 |
Target: 5'- cUCGCCGcgcugGCGCGccugcgcGUGGUccccggcgcgaacguCGGCGCCa -3' miRNA: 3'- cAGCGGCa----UGCGC-------CACCG---------------GCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 63164 | 0.66 | 0.533004 |
Target: 5'- -aCGCgGUACGgGGccuuggggcgcacggGGCCGGgcuCGCCGa -3' miRNA: 3'- caGCGgCAUGCgCCa--------------CCGGCC---GCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 96578 | 0.66 | 0.532069 |
Target: 5'- -gCGCCGccuCGCGGc-GCgaGGCGCCGg -3' miRNA: 3'- caGCGGCau-GCGCCacCGg-CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 71758 | 0.66 | 0.532069 |
Target: 5'- -gCGCCGcGCGUGGUccugcGGCagCGGCGgCGg -3' miRNA: 3'- caGCGGCaUGCGCCA-----CCG--GCCGCgGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 21534 | 0.66 | 0.532069 |
Target: 5'- uUCgGCCGggGC-CGG-GGCCGGgGCCu -3' miRNA: 3'- cAG-CGGCa-UGcGCCaCCGGCCgCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 104067 | 0.66 | 0.532069 |
Target: 5'- --gGCCG-ACGCGGcgcUGcGCCG-CGCCGa -3' miRNA: 3'- cagCGGCaUGCGCC---AC-CGGCcGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 99148 | 0.66 | 0.532069 |
Target: 5'- --gGCCGUGCaC-GUGGCCGcCGCCGc -3' miRNA: 3'- cagCGGCAUGcGcCACCGGCcGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 54414 | 0.66 | 0.532069 |
Target: 5'- -gCGCCG-AgGCGcUGGCgCGGCGCUu -3' miRNA: 3'- caGCGGCaUgCGCcACCG-GCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 28838 | 0.66 | 0.526474 |
Target: 5'- -gCcCCGgggACGCGGgcccggcucccccauUGGCCGGCGCg- -3' miRNA: 3'- caGcGGCa--UGCGCC---------------ACCGGCCGCGgc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 28278 | 0.66 | 0.526474 |
Target: 5'- -gCcCCGgggACGCGGgcccggcucccccauUGGCCGGCGCg- -3' miRNA: 3'- caGcGGCa--UGCGCC---------------ACCGGCCGCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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