miRNA display CGI


Results 121 - 140 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 114842 0.67 0.501583
Target:  5'- -aCGCCGUGCGCgaccacguaggcggGGUccucGGCCaGGuCGCUGa -3'
miRNA:   3'- caGCGGCAUGCG--------------CCA----CCGG-CC-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 92538 0.67 0.498848
Target:  5'- -gCGCCGgACGUggacucggugcagcaGGUGGCCGaGuCGCUGg -3'
miRNA:   3'- caGCGGCaUGCG---------------CCACCGGC-C-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 73112 0.67 0.513506
Target:  5'- cUCGCCGgcggcgcgcccGCGCGGguuGCaCGcGCGCCGa -3'
miRNA:   3'- cAGCGGCa----------UGCGCCac-CG-GC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 69823 0.66 0.521828
Target:  5'- cUCGCCGUccacguuguaGCGCGuGcgGGCCGGCaggacucGUCGu -3'
miRNA:   3'- cAGCGGCA----------UGCGC-Ca-CCGGCCG-------CGGC- -5'
29373 5' -64.1 NC_006151.1 + 2160 0.66 0.522756
Target:  5'- aGUCcCCGUccuCGcCGG-GGCCGGCcCCGg -3'
miRNA:   3'- -CAGcGGCAu--GC-GCCaCCGGCCGcGGC- -5'
29373 5' -64.1 NC_006151.1 + 96578 0.66 0.532069
Target:  5'- -gCGCCGccuCGCGGc-GCgaGGCGCCGg -3'
miRNA:   3'- caGCGGCau-GCGCCacCGg-CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 71758 0.66 0.532069
Target:  5'- -gCGCCGcGCGUGGUccugcGGCagCGGCGgCGg -3'
miRNA:   3'- caGCGGCaUGCGCCA-----CCG--GCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 21534 0.66 0.532069
Target:  5'- uUCgGCCGggGC-CGG-GGCCGGgGCCu -3'
miRNA:   3'- cAG-CGGCa-UGcGCCaCCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 104067 0.66 0.532069
Target:  5'- --gGCCG-ACGCGGcgcUGcGCCG-CGCCGa -3'
miRNA:   3'- cagCGGCaUGCGCC---AC-CGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 99148 0.66 0.532069
Target:  5'- --gGCCGUGCaC-GUGGCCGcCGCCGc -3'
miRNA:   3'- cagCGGCAUGcGcCACCGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 54414 0.66 0.532069
Target:  5'- -gCGCCG-AgGCGcUGGCgCGGCGCUu -3'
miRNA:   3'- caGCGGCaUgCGCcACCG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 28838 0.66 0.526474
Target:  5'- -gCcCCGgggACGCGGgcccggcucccccauUGGCCGGCGCg- -3'
miRNA:   3'- caGcGGCa--UGCGCC---------------ACCGGCCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 28278 0.66 0.526474
Target:  5'- -gCcCCGgggACGCGGgcccggcucccccauUGGCCGGCGCg- -3'
miRNA:   3'- caGcGGCa--UGCGCC---------------ACCGGCCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 117099 0.66 0.522756
Target:  5'- -aCGCCGgccuCGUGcGUcaccaGGCCGGCGCa- -3'
miRNA:   3'- caGCGGCau--GCGC-CA-----CCGGCCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 645 0.66 0.522756
Target:  5'- -aCGCCGgcuuccgggGCGCGGccggGGCgGGCuCCGc -3'
miRNA:   3'- caGCGGCa--------UGCGCCa---CCGgCCGcGGC- -5'
29373 5' -64.1 NC_006151.1 + 140282 0.66 0.522756
Target:  5'- -cCGUCG-ACGagcucGUGcGCCGGCGCCGc -3'
miRNA:   3'- caGCGGCaUGCgc---CAC-CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 115084 0.66 0.522756
Target:  5'- --gGCCGUcaugACGaaGUcggccacguccaGGCCGGCGCCGc -3'
miRNA:   3'- cagCGGCA----UGCgcCA------------CCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 97336 0.66 0.522756
Target:  5'- gGUCGUUgaacagGUACGCGGggaaGGCCgcGGCGgCGg -3'
miRNA:   3'- -CAGCGG------CAUGCGCCa---CCGG--CCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 96077 0.66 0.522756
Target:  5'- --aGCCGcGCGCGc-GGCCGGCGaaGa -3'
miRNA:   3'- cagCGGCaUGCGCcaCCGGCCGCggC- -5'
29373 5' -64.1 NC_006151.1 + 68426 0.66 0.522756
Target:  5'- cUCGCCccgcuacACGCGGcGGCacaGGCGCuCGa -3'
miRNA:   3'- cAGCGGca-----UGCGCCaCCGg--CCGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.