Results 81 - 100 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29373 | 5' | -64.1 | NC_006151.1 | + | 28838 | 0.66 | 0.526474 |
Target: 5'- -gCcCCGgggACGCGGgcccggcucccccauUGGCCGGCGCg- -3' miRNA: 3'- caGcGGCa--UGCGCC---------------ACCGGCCGCGgc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 28278 | 0.66 | 0.526474 |
Target: 5'- -gCcCCGgggACGCGGgcccggcucccccauUGGCCGGCGCg- -3' miRNA: 3'- caGcGGCa--UGCGCC---------------ACCGGCCGCGgc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 117099 | 0.66 | 0.522756 |
Target: 5'- -aCGCCGgccuCGUGcGUcaccaGGCCGGCGCa- -3' miRNA: 3'- caGCGGCau--GCGC-CA-----CCGGCCGCGgc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 645 | 0.66 | 0.522756 |
Target: 5'- -aCGCCGgcuuccgggGCGCGGccggGGCgGGCuCCGc -3' miRNA: 3'- caGCGGCa--------UGCGCCa---CCGgCCGcGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 140282 | 0.66 | 0.522756 |
Target: 5'- -cCGUCG-ACGagcucGUGcGCCGGCGCCGc -3' miRNA: 3'- caGCGGCaUGCgc---CAC-CGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 115084 | 0.66 | 0.522756 |
Target: 5'- --gGCCGUcaugACGaaGUcggccacguccaGGCCGGCGCCGc -3' miRNA: 3'- cagCGGCA----UGCgcCA------------CCGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 97336 | 0.66 | 0.522756 |
Target: 5'- gGUCGUUgaacagGUACGCGGggaaGGCCgcGGCGgCGg -3' miRNA: 3'- -CAGCGG------CAUGCGCCa---CCGG--CCGCgGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 21534 | 0.66 | 0.532069 |
Target: 5'- uUCgGCCGggGC-CGG-GGCCGGgGCCu -3' miRNA: 3'- cAG-CGGCa-UGcGCCaCCGGCCgCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 71758 | 0.66 | 0.532069 |
Target: 5'- -gCGCCGcGCGUGGUccugcGGCagCGGCGgCGg -3' miRNA: 3'- caGCGGCaUGCGCCA-----CCG--GCCGCgGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 96578 | 0.66 | 0.532069 |
Target: 5'- -gCGCCGccuCGCGGc-GCgaGGCGCCGg -3' miRNA: 3'- caGCGGCau-GCGCCacCGg-CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 48669 | 0.66 | 0.541442 |
Target: 5'- -cCGCCGgg-GCaGG-GGCCGGgGCCu -3' miRNA: 3'- caGCGGCaugCG-CCaCCGGCCgCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 141634 | 0.66 | 0.541442 |
Target: 5'- gGUCGCUGc-CGCGGcGGCgCGGCgggGCCc -3' miRNA: 3'- -CAGCGGCauGCGCCaCCG-GCCG---CGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 130347 | 0.66 | 0.541442 |
Target: 5'- -gCGCCGcggcguCGUGGUugacGGCCGcgcGCGCCGc -3' miRNA: 3'- caGCGGCau----GCGCCA----CCGGC---CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 129685 | 0.66 | 0.541442 |
Target: 5'- -cCGuCCGgcCGCcGUGGaccgCGGCGCCGa -3' miRNA: 3'- caGC-GGCauGCGcCACCg---GCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 75593 | 0.66 | 0.541442 |
Target: 5'- gGUCGCCGacgACGacgaGGUcGGCgCGcacgcGCGCCGa -3' miRNA: 3'- -CAGCGGCa--UGCg---CCA-CCG-GC-----CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 54449 | 0.66 | 0.541442 |
Target: 5'- -gCGCC---CGCcGUGGCCGaGCGCCu -3' miRNA: 3'- caGCGGcauGCGcCACCGGC-CGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 64804 | 0.66 | 0.541442 |
Target: 5'- -aCGCCcu-CGCGGaaGCCGGCgGCCa -3' miRNA: 3'- caGCGGcauGCGCCacCGGCCG-CGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 57439 | 0.66 | 0.540502 |
Target: 5'- -aCGuCCGU-CGCGGcGGCCcccgcgucggccaGGUGCCGc -3' miRNA: 3'- caGC-GGCAuGCGCCaCCGG-------------CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 85351 | 0.66 | 0.534875 |
Target: 5'- cUCGCCGcgcugGCGCGccugcgcGUGGUccccggcgcgaacguCGGCGCCa -3' miRNA: 3'- cAGCGGCa----UGCGC-------CACCG---------------GCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 63164 | 0.66 | 0.533004 |
Target: 5'- -aCGCgGUACGgGGccuuggggcgcacggGGCCGGgcuCGCCGa -3' miRNA: 3'- caGCGgCAUGCgCCa--------------CCGGCC---GCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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