Results 121 - 140 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29373 | 5' | -64.1 | NC_006151.1 | + | 114842 | 0.67 | 0.501583 |
Target: 5'- -aCGCCGUGCGCgaccacguaggcggGGUccucGGCCaGGuCGCUGa -3' miRNA: 3'- caGCGGCAUGCG--------------CCA----CCGG-CC-GCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 92538 | 0.67 | 0.498848 |
Target: 5'- -gCGCCGgACGUggacucggugcagcaGGUGGCCGaGuCGCUGg -3' miRNA: 3'- caGCGGCaUGCG---------------CCACCGGC-C-GCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 73112 | 0.67 | 0.513506 |
Target: 5'- cUCGCCGgcggcgcgcccGCGCGGguuGCaCGcGCGCCGa -3' miRNA: 3'- cAGCGGCa----------UGCGCCac-CG-GC-CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 69823 | 0.66 | 0.521828 |
Target: 5'- cUCGCCGUccacguuguaGCGCGuGcgGGCCGGCaggacucGUCGu -3' miRNA: 3'- cAGCGGCA----------UGCGC-Ca-CCGGCCG-------CGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 2160 | 0.66 | 0.522756 |
Target: 5'- aGUCcCCGUccuCGcCGG-GGCCGGCcCCGg -3' miRNA: 3'- -CAGcGGCAu--GC-GCCaCCGGCCGcGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 96578 | 0.66 | 0.532069 |
Target: 5'- -gCGCCGccuCGCGGc-GCgaGGCGCCGg -3' miRNA: 3'- caGCGGCau-GCGCCacCGg-CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 71758 | 0.66 | 0.532069 |
Target: 5'- -gCGCCGcGCGUGGUccugcGGCagCGGCGgCGg -3' miRNA: 3'- caGCGGCaUGCGCCA-----CCG--GCCGCgGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 21534 | 0.66 | 0.532069 |
Target: 5'- uUCgGCCGggGC-CGG-GGCCGGgGCCu -3' miRNA: 3'- cAG-CGGCa-UGcGCCaCCGGCCgCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 104067 | 0.66 | 0.532069 |
Target: 5'- --gGCCG-ACGCGGcgcUGcGCCG-CGCCGa -3' miRNA: 3'- cagCGGCaUGCGCC---AC-CGGCcGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 99148 | 0.66 | 0.532069 |
Target: 5'- --gGCCGUGCaC-GUGGCCGcCGCCGc -3' miRNA: 3'- cagCGGCAUGcGcCACCGGCcGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 54414 | 0.66 | 0.532069 |
Target: 5'- -gCGCCG-AgGCGcUGGCgCGGCGCUu -3' miRNA: 3'- caGCGGCaUgCGCcACCG-GCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 28838 | 0.66 | 0.526474 |
Target: 5'- -gCcCCGgggACGCGGgcccggcucccccauUGGCCGGCGCg- -3' miRNA: 3'- caGcGGCa--UGCGCC---------------ACCGGCCGCGgc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 28278 | 0.66 | 0.526474 |
Target: 5'- -gCcCCGgggACGCGGgcccggcucccccauUGGCCGGCGCg- -3' miRNA: 3'- caGcGGCa--UGCGCC---------------ACCGGCCGCGgc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 117099 | 0.66 | 0.522756 |
Target: 5'- -aCGCCGgccuCGUGcGUcaccaGGCCGGCGCa- -3' miRNA: 3'- caGCGGCau--GCGC-CA-----CCGGCCGCGgc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 645 | 0.66 | 0.522756 |
Target: 5'- -aCGCCGgcuuccgggGCGCGGccggGGCgGGCuCCGc -3' miRNA: 3'- caGCGGCa--------UGCGCCa---CCGgCCGcGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 140282 | 0.66 | 0.522756 |
Target: 5'- -cCGUCG-ACGagcucGUGcGCCGGCGCCGc -3' miRNA: 3'- caGCGGCaUGCgc---CAC-CGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 115084 | 0.66 | 0.522756 |
Target: 5'- --gGCCGUcaugACGaaGUcggccacguccaGGCCGGCGCCGc -3' miRNA: 3'- cagCGGCA----UGCgcCA------------CCGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 97336 | 0.66 | 0.522756 |
Target: 5'- gGUCGUUgaacagGUACGCGGggaaGGCCgcGGCGgCGg -3' miRNA: 3'- -CAGCGG------CAUGCGCCa---CCGG--CCGCgGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 96077 | 0.66 | 0.522756 |
Target: 5'- --aGCCGcGCGCGc-GGCCGGCGaaGa -3' miRNA: 3'- cagCGGCaUGCGCcaCCGGCCGCggC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 68426 | 0.66 | 0.522756 |
Target: 5'- cUCGCCccgcuacACGCGGcGGCacaGGCGCuCGa -3' miRNA: 3'- cAGCGGca-----UGCGCCaCCGg--CCGCG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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