miRNA display CGI


Results 1 - 20 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 137197 1.11 0.001756
Target:  5'- aGCCGCCACGAGGUGUUCAACGCCCGGc -3'
miRNA:   3'- -CGGCGGUGCUCCACAAGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 36721 0.85 0.108965
Target:  5'- cGCCGCCGCGAGGcgGcUCGauccucggccgcuugGCGCCCGGa -3'
miRNA:   3'- -CGGCGGUGCUCCa-CaAGU---------------UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 18757 0.8 0.222531
Target:  5'- gGCC-CCACGGGGUGccCGGgGCCCGGg -3'
miRNA:   3'- -CGGcGGUGCUCCACaaGUUgCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 120809 0.79 0.256562
Target:  5'- cGCCGCgCGCGAGGUGcUgGACGCgCCGc -3'
miRNA:   3'- -CGGCG-GUGCUCCACaAgUUGCG-GGCc -5'
29374 3' -57.2 NC_006151.1 + 107114 0.78 0.268818
Target:  5'- cGCCGCC-CGAGccgccgCGACGCCCGGg -3'
miRNA:   3'- -CGGCGGuGCUCcacaa-GUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 36614 0.78 0.288081
Target:  5'- cCCGCCGCcGGGccgGUcUCGGCGCCCGGc -3'
miRNA:   3'- cGGCGGUGcUCCa--CA-AGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 67833 0.77 0.294739
Target:  5'- cGUCGUCGCGGGG-GcUCAGCaGCCCGGc -3'
miRNA:   3'- -CGGCGGUGCUCCaCaAGUUG-CGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 100071 0.76 0.337197
Target:  5'- cGCgGCCGcCGAGGUGcUCGAgGCgCCGGc -3'
miRNA:   3'- -CGgCGGU-GCUCCACaAGUUgCG-GGCC- -5'
29374 3' -57.2 NC_006151.1 + 54355 0.75 0.383939
Target:  5'- gGCgCGCUACGAGGa---CGugGCCCGGg -3'
miRNA:   3'- -CG-GCGGUGCUCCacaaGUugCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 55967 0.74 0.426038
Target:  5'- cGCgGCUgguguGCGAGGUGcgCGAggUGCCCGGg -3'
miRNA:   3'- -CGgCGG-----UGCUCCACaaGUU--GCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 20141 0.74 0.449883
Target:  5'- gGgCGCCGCGGGGgcgGcgCGuggaccgccgggccGCGCCCGGg -3'
miRNA:   3'- -CgGCGGUGCUCCa--CaaGU--------------UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 49156 0.74 0.470763
Target:  5'- gGCUGCCugGAGGccUGggCG-CGCCgCGGg -3'
miRNA:   3'- -CGGCGGugCUCC--ACaaGUuGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 64627 0.73 0.517753
Target:  5'- cGCCgGCCGCGGGGcg--CGGCGCCCc- -3'
miRNA:   3'- -CGG-CGGUGCUCCacaaGUUGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 64475 0.73 0.527381
Target:  5'- cGCCGCCGCGGcGGg----GACGCCCGcGg -3'
miRNA:   3'- -CGGCGGUGCU-CCacaagUUGCGGGC-C- -5'
29374 3' -57.2 NC_006151.1 + 98019 0.72 0.53319
Target:  5'- cGCCGgccagguCCGCGGGGUGgcgCAGCGCgagcaccaccagccCCGGg -3'
miRNA:   3'- -CGGC-------GGUGCUCCACaa-GUUGCG--------------GGCC- -5'
29374 3' -57.2 NC_006151.1 + 77219 0.72 0.537075
Target:  5'- cGCCGCCGCGu-GUGU---GCGCCgGGa -3'
miRNA:   3'- -CGGCGGUGCucCACAaguUGCGGgCC- -5'
29374 3' -57.2 NC_006151.1 + 5899 0.72 0.54683
Target:  5'- uGCCGCUGCGAGuGcUGccggggUCGGCGgCCGGg -3'
miRNA:   3'- -CGGCGGUGCUC-C-ACa-----AGUUGCgGGCC- -5'
29374 3' -57.2 NC_006151.1 + 115678 0.72 0.556641
Target:  5'- gGCCGCCACGGGGaggcaggGgagCAgcccguuggccACGCCCGu -3'
miRNA:   3'- -CGGCGGUGCUCCa------Caa-GU-----------UGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 120112 0.72 0.566501
Target:  5'- cGCCGCCGCGuGGUGgaC-AUGCUcaaCGGg -3'
miRNA:   3'- -CGGCGGUGCuCCACaaGuUGCGG---GCC- -5'
29374 3' -57.2 NC_006151.1 + 113097 0.72 0.576406
Target:  5'- cGCCGCCAcCGGGGg---CGGgGCCgCGGa -3'
miRNA:   3'- -CGGCGGU-GCUCCacaaGUUgCGG-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.