miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 2281 0.66 0.857301
Target:  5'- gGCCGgcggggcgcCCGCGGcGGcga-CGGCGCCCGGg -3'
miRNA:   3'- -CGGC---------GGUGCU-CCacaaGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 2468 0.67 0.817095
Target:  5'- aGCCcccagcgguugGCCGCGcGGUGcccgaaggCGGCGCCCGc -3'
miRNA:   3'- -CGG-----------CGGUGCuCCACaa------GUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 3393 0.66 0.892635
Target:  5'- gGCCGCCucgGAGGgccgCGGCGUgUGGg -3'
miRNA:   3'- -CGGCGGug-CUCCacaaGUUGCGgGCC- -5'
29374 3' -57.2 NC_006151.1 + 3446 0.71 0.605323
Target:  5'- aGCCGCCgucgggcGCGGGGUGcUCGggcauGgGCCCGa -3'
miRNA:   3'- -CGGCGG-------UGCUCCACaAGU-----UgCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 4128 0.68 0.80854
Target:  5'- uGCCGCCGCucGGccgGgcCGGC-CCCGGg -3'
miRNA:   3'- -CGGCGGUGcuCCa--CaaGUUGcGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 4391 0.68 0.772863
Target:  5'- cCCGgCGCGGGG-GUccgCGGCgcgGCCCGGg -3'
miRNA:   3'- cGGCgGUGCUCCaCAa--GUUG---CGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 4906 0.68 0.80854
Target:  5'- aGCCggGCCagggcuccccgaGCGGGGUGagCAGCGgCCCGu -3'
miRNA:   3'- -CGG--CGG------------UGCUCCACaaGUUGC-GGGCc -5'
29374 3' -57.2 NC_006151.1 + 5631 0.67 0.833712
Target:  5'- cGCCGCCGCcGGGcgccgaGACcgGCCCGGc -3'
miRNA:   3'- -CGGCGGUGcUCCacaag-UUG--CGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 5899 0.72 0.54683
Target:  5'- uGCCGCUGCGAGuGcUGccggggUCGGCGgCCGGg -3'
miRNA:   3'- -CGGCGGUGCUC-C-ACa-----AGUUGCgGGCC- -5'
29374 3' -57.2 NC_006151.1 + 6144 0.67 0.817095
Target:  5'- cGCgGCCGCGAGGa---CGGCGgCCuCGGc -3'
miRNA:   3'- -CGgCGGUGCUCCacaaGUUGC-GG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 6254 0.7 0.696271
Target:  5'- uGCCGCCGuCGGGGccGgacgCGAUGCCCu- -3'
miRNA:   3'- -CGGCGGU-GCUCCa-Caa--GUUGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 10422 0.66 0.885991
Target:  5'- -aCGCCGCG-GGUGggcCGAgGCCggCGGg -3'
miRNA:   3'- cgGCGGUGCuCCACaa-GUUgCGG--GCC- -5'
29374 3' -57.2 NC_006151.1 + 15919 0.66 0.879131
Target:  5'- cGCCGCCGCcccguGAGGcGggCcuCGCCCc- -3'
miRNA:   3'- -CGGCGGUG-----CUCCaCaaGuuGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 17078 0.7 0.66646
Target:  5'- gGCCGCCGCcGGGUcaggCGcGCGCCCGu -3'
miRNA:   3'- -CGGCGGUGcUCCAcaa-GU-UGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 17160 0.66 0.885991
Target:  5'- gGUCGCa--GAGGUcggCGGCGCCCaGGa -3'
miRNA:   3'- -CGGCGgugCUCCAcaaGUUGCGGG-CC- -5'
29374 3' -57.2 NC_006151.1 + 17560 0.66 0.864781
Target:  5'- cGCCucgcCCACGaAGGcgGggauGCGCCCGGa -3'
miRNA:   3'- -CGGc---GGUGC-UCCa-CaaguUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 18556 0.66 0.892635
Target:  5'- aCgGCCGCGAGGc------CGCCCGGc -3'
miRNA:   3'- cGgCGGUGCUCCacaaguuGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 18757 0.8 0.222531
Target:  5'- gGCC-CCACGGGGUGccCGGgGCCCGGg -3'
miRNA:   3'- -CGGcGGUGCUCCACaaGUUgCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 19020 0.7 0.656458
Target:  5'- cGCgCGCCgGCGAGGUGaagCugcACGCCgGGu -3'
miRNA:   3'- -CG-GCGG-UGCUCCACaa-Gu--UGCGGgCC- -5'
29374 3' -57.2 NC_006151.1 + 19638 0.71 0.626373
Target:  5'- cGUCGCCGCGcgcgucgaGGGUGaagUUGGCGCCCucGGa -3'
miRNA:   3'- -CGGCGGUGC--------UCCACa--AGUUGCGGG--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.