miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 137197 1.11 0.001756
Target:  5'- aGCCGCCACGAGGUGUUCAACGCCCGGc -3'
miRNA:   3'- -CGGCGGUGCUCCACAAGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 18556 0.66 0.892635
Target:  5'- aCgGCCGCGAGGc------CGCCCGGc -3'
miRNA:   3'- cGgCGGUGCUCCacaaguuGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 64100 0.66 0.885991
Target:  5'- cCCG-CACGAGaagaggUCGugGCCCGGc -3'
miRNA:   3'- cGGCgGUGCUCcaca--AGUugCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 130348 0.66 0.885991
Target:  5'- cGCCGCgGCGucGUGgUUGACGgCCGc -3'
miRNA:   3'- -CGGCGgUGCucCACaAGUUGCgGGCc -5'
29374 3' -57.2 NC_006151.1 + 87487 0.66 0.885991
Target:  5'- aGCCGCCGCGGccgcccccGUUCAGgccgcCGCcCCGGc -3'
miRNA:   3'- -CGGCGGUGCUcca-----CAAGUU-----GCG-GGCC- -5'
29374 3' -57.2 NC_006151.1 + 61307 0.66 0.885991
Target:  5'- gGCgCGUCGCGcugcAGGUccaGggaGACGCCCGGc -3'
miRNA:   3'- -CG-GCGGUGC----UCCA---CaagUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 10422 0.66 0.885991
Target:  5'- -aCGCCGCG-GGUGggcCGAgGCCggCGGg -3'
miRNA:   3'- cgGCGGUGCuCCACaa-GUUgCGG--GCC- -5'
29374 3' -57.2 NC_006151.1 + 140205 0.66 0.885991
Target:  5'- gGCCaCCGCGGGGgcgGUgcugCAgaaccuGCGCCUGa -3'
miRNA:   3'- -CGGcGGUGCUCCa--CAa---GU------UGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 73377 0.66 0.885991
Target:  5'- uCCGUCACGGGGgcgcgCAGCGCggCCGc -3'
miRNA:   3'- cGGCGGUGCUCCacaa-GUUGCG--GGCc -5'
29374 3' -57.2 NC_006151.1 + 69127 0.66 0.892635
Target:  5'- cGCCuCCGCGggcagggcgcgcGGGUGcUCGACGCCg-- -3'
miRNA:   3'- -CGGcGGUGC------------UCCACaAGUUGCGGgcc -5'
29374 3' -57.2 NC_006151.1 + 89698 0.66 0.892635
Target:  5'- gGCCGCCGCGuccAGGaacccggCGGCGCCgGc -3'
miRNA:   3'- -CGGCGGUGC---UCCacaa---GUUGCGGgCc -5'
29374 3' -57.2 NC_006151.1 + 104886 0.66 0.892635
Target:  5'- cGCCuGCUgcGCGAGGUGgUgGACGCggCGGc -3'
miRNA:   3'- -CGG-CGG--UGCUCCACaAgUUGCGg-GCC- -5'
29374 3' -57.2 NC_006151.1 + 120753 0.66 0.892635
Target:  5'- gGCCGCguCAUGgccuGGGUG--CGGCGCCCGc -3'
miRNA:   3'- -CGGCG--GUGC----UCCACaaGUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 91259 0.66 0.892635
Target:  5'- cCCGUCGCGAGG------ACGCCCGc -3'
miRNA:   3'- cGGCGGUGCUCCacaaguUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 82021 0.66 0.892635
Target:  5'- cGCCGCCgacagcuggGCGAGGUagUCGuCGCUCu- -3'
miRNA:   3'- -CGGCGG---------UGCUCCAcaAGUuGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 78710 0.66 0.892635
Target:  5'- cGUCGCCGCGA------CGGCGCCCGu -3'
miRNA:   3'- -CGGCGGUGCUccacaaGUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 49295 0.66 0.892635
Target:  5'- cCCGCCccaaGCu-GGUGUUCAugcucugggGCGCCCa- -3'
miRNA:   3'- cGGCGG----UGcuCCACAAGU---------UGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 40577 0.66 0.892635
Target:  5'- gGCCGCgGCgGAGG-GcUCGGCGgcggaggaucguCCCGGu -3'
miRNA:   3'- -CGGCGgUG-CUCCaCaAGUUGC------------GGGCC- -5'
29374 3' -57.2 NC_006151.1 + 3393 0.66 0.892635
Target:  5'- gGCCGCCucgGAGGgccgCGGCGUgUGGg -3'
miRNA:   3'- -CGGCGGug-CUCCacaaGUUGCGgGCC- -5'
29374 3' -57.2 NC_006151.1 + 105053 0.66 0.892635
Target:  5'- cGgCGCCGuCGAGGa----GGCGCCCGa -3'
miRNA:   3'- -CgGCGGU-GCUCCacaagUUGCGGGCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.