miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 5' -52.7 NC_006151.1 + 2280 0.67 0.961924
Target:  5'- cGGCCGGCGgggCGcCCgCGGCGgCGACg -3'
miRNA:   3'- -CUGGUUGUa--GCaGGaGCUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 2323 0.75 0.630888
Target:  5'- cACCAGCGgggCGgCCUCGGCGUCGGg- -3'
miRNA:   3'- cUGGUUGUa--GCaGGAGCUGCAGCUga -5'
29374 5' -52.7 NC_006151.1 + 3131 0.67 0.958291
Target:  5'- aGGCCGggcGCGgggCGcCCUCGGCGggcUCGGCg -3'
miRNA:   3'- -CUGGU---UGUa--GCaGGAGCUGC---AGCUGa -5'
29374 5' -52.7 NC_006151.1 + 3201 0.78 0.479074
Target:  5'- cACCAcgcGCA-CGUCCUCGGgGUCGGCUa -3'
miRNA:   3'- cUGGU---UGUaGCAGGAGCUgCAGCUGA- -5'
29374 5' -52.7 NC_006151.1 + 4546 0.7 0.882166
Target:  5'- cGGCCAugG-CGUCCcCGAUGUgCGGCa -3'
miRNA:   3'- -CUGGUugUaGCAGGaGCUGCA-GCUGa -5'
29374 5' -52.7 NC_006151.1 + 4821 0.67 0.967584
Target:  5'- uGGCgGACGUCGUCCUCGucccagagccccucGCGggagucccCGGCg -3'
miRNA:   3'- -CUGgUUGUAGCAGGAGC--------------UGCa-------GCUGa -5'
29374 5' -52.7 NC_006151.1 + 14201 0.75 0.610097
Target:  5'- -gUCGGCAUCGgCCUCGACGaCGACg -3'
miRNA:   3'- cuGGUUGUAGCaGGAGCUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 17025 0.67 0.957157
Target:  5'- uGGCCGGgAUcccggcgacgaucaCGUCCagGGCGUCGGCg -3'
miRNA:   3'- -CUGGUUgUA--------------GCAGGagCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 18361 0.71 0.818328
Target:  5'- uGCUGAacUCGUCCUCGGCGUCcaGGCUc -3'
miRNA:   3'- cUGGUUguAGCAGGAGCUGCAG--CUGA- -5'
29374 5' -52.7 NC_006151.1 + 18438 0.68 0.945994
Target:  5'- cGGCgGGCGUCGcccgccUCCUCGuCGUCGuCg -3'
miRNA:   3'- -CUGgUUGUAGC------AGGAGCuGCAGCuGa -5'
29374 5' -52.7 NC_006151.1 + 20593 0.71 0.835489
Target:  5'- gGGCCGGCAcUCGUCCgcgGACGaCGGCg -3'
miRNA:   3'- -CUGGUUGU-AGCAGGag-CUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 26868 0.84 0.220701
Target:  5'- aGCCGGCGUCGUCCucgUCGACGUCGcACUc -3'
miRNA:   3'- cUGGUUGUAGCAGG---AGCUGCAGC-UGA- -5'
29374 5' -52.7 NC_006151.1 + 37385 0.66 0.974255
Target:  5'- cGGCCGACGgccgCGUCCgcuacggCGGCGcCGGg- -3'
miRNA:   3'- -CUGGUUGUa---GCAGGa------GCUGCaGCUga -5'
29374 5' -52.7 NC_006151.1 + 38366 0.67 0.958291
Target:  5'- cGGCCu-CGUCGUCCcagcgcCGGCGcCGGCg -3'
miRNA:   3'- -CUGGuuGUAGCAGGa-----GCUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 49097 0.72 0.77252
Target:  5'- uGGCCAACAUCuucgcggcgGUCCgggCGACGUaccCGACg -3'
miRNA:   3'- -CUGGUUGUAG---------CAGGa--GCUGCA---GCUGa -5'
29374 5' -52.7 NC_006151.1 + 51878 0.66 0.98339
Target:  5'- -uCCAGCuccagGUCGUCCaCGAC-UCGACa -3'
miRNA:   3'- cuGGUUG-----UAGCAGGaGCUGcAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 58368 0.66 0.97682
Target:  5'- cGCC-GCGUCGUgaUCUCGACGgagagcgCGGCg -3'
miRNA:   3'- cUGGuUGUAGCA--GGAGCUGCa------GCUGa -5'
29374 5' -52.7 NC_006151.1 + 58458 0.69 0.920648
Target:  5'- cGCgCGGCGUCGcggUCCacgaCGACGUCGGCg -3'
miRNA:   3'- cUG-GUUGUAGC---AGGa---GCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 59417 0.67 0.96533
Target:  5'- cGAgCAGCAgCGgcgCCagcUCGGCGUCGGCc -3'
miRNA:   3'- -CUgGUUGUaGCa--GG---AGCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 59762 0.72 0.80948
Target:  5'- --gCAGC-UCGUCCUCGggcACGUCGGCc -3'
miRNA:   3'- cugGUUGuAGCAGGAGC---UGCAGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.