miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 5' -52.7 NC_006151.1 + 96287 0.67 0.968208
Target:  5'- gGGCCAgguACAUC-UCCUCGuacuugaGCGcCGACUg -3'
miRNA:   3'- -CUGGU---UGUAGcAGGAGC-------UGCaGCUGA- -5'
29374 5' -52.7 NC_006151.1 + 4821 0.67 0.967584
Target:  5'- uGGCgGACGUCGUCCUCGucccagagccccucGCGggagucccCGGCg -3'
miRNA:   3'- -CUGgUUGUAGCAGGAGC--------------UGCa-------GCUGa -5'
29374 5' -52.7 NC_006151.1 + 122891 0.67 0.966631
Target:  5'- gGGCCAACcgCGacgcccucgagcgccUCCUCGAgGgcggCGACg -3'
miRNA:   3'- -CUGGUUGuaGC---------------AGGAGCUgCa---GCUGa -5'
29374 5' -52.7 NC_006151.1 + 135282 0.67 0.96533
Target:  5'- --aCGAgGUCGUCCgugUCcGCGUCGACg -3'
miRNA:   3'- cugGUUgUAGCAGG---AGcUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 59417 0.67 0.96533
Target:  5'- cGAgCAGCAgCGgcgCCagcUCGGCGUCGGCc -3'
miRNA:   3'- -CUgGUUGUaGCa--GG---AGCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 79782 0.68 0.936593
Target:  5'- cGGCCGG-AUCGcggCCUCGGCG-CGGCa -3'
miRNA:   3'- -CUGGUUgUAGCa--GGAGCUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 85467 0.68 0.941416
Target:  5'- cGGCCAgaACcUCuUCCUCGGCGagGACg -3'
miRNA:   3'- -CUGGU--UGuAGcAGGAGCUGCagCUGa -5'
29374 5' -52.7 NC_006151.1 + 86276 0.68 0.941416
Target:  5'- cGACCGcgGCcccuUCuUCCUCGGCGUCGuCa -3'
miRNA:   3'- -CUGGU--UGu---AGcAGGAGCUGCAGCuGa -5'
29374 5' -52.7 NC_006151.1 + 119484 0.68 0.945994
Target:  5'- uGGCCGGCAg---CCUCGACGcCGAg- -3'
miRNA:   3'- -CUGGUUGUagcaGGAGCUGCaGCUga -5'
29374 5' -52.7 NC_006151.1 + 18438 0.68 0.945994
Target:  5'- cGGCgGGCGUCGcccgccUCCUCGuCGUCGuCg -3'
miRNA:   3'- -CUGgUUGUAGC------AGGAGCuGCAGCuGa -5'
29374 5' -52.7 NC_006151.1 + 131790 0.68 0.949055
Target:  5'- cGCCGcCGUCGucagcgcgccauccUCCUCGGCcUCGGCUa -3'
miRNA:   3'- cUGGUuGUAGC--------------AGGAGCUGcAGCUGA- -5'
29374 5' -52.7 NC_006151.1 + 94264 0.69 0.902489
Target:  5'- cGGCCA----CGUCCUUGGCGUCGuCg -3'
miRNA:   3'- -CUGGUuguaGCAGGAGCUGCAGCuGa -5'
29374 5' -52.7 NC_006151.1 + 61814 0.69 0.902489
Target:  5'- -cCCAGCGUgGUgCUcuacgCGGCGUCGACg -3'
miRNA:   3'- cuGGUUGUAgCAgGA-----GCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 65990 0.69 0.902489
Target:  5'- cGGCCGcgaGCG-CGUCCUCcgcGGCGUCGAg- -3'
miRNA:   3'- -CUGGU---UGUaGCAGGAG---CUGCAGCUga -5'
29374 5' -52.7 NC_006151.1 + 135034 0.69 0.91484
Target:  5'- gGGCC-GCGUCGUCCUCGGgG-CGGu- -3'
miRNA:   3'- -CUGGuUGUAGCAGGAGCUgCaGCUga -5'
29374 5' -52.7 NC_006151.1 + 58458 0.69 0.920648
Target:  5'- cGCgCGGCGUCGcggUCCacgaCGACGUCGGCg -3'
miRNA:   3'- cUG-GUUGUAGC---AGGa---GCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 4546 0.7 0.882166
Target:  5'- cGGCCAugG-CGUCCcCGAUGUgCGGCa -3'
miRNA:   3'- -CUGGUugUaGCAGGaGCUGCA-GCUGa -5'
29374 5' -52.7 NC_006151.1 + 116866 0.7 0.874927
Target:  5'- aGGCC-GCGUCGUCgccggccuugcaCUCGAUGUCGAa- -3'
miRNA:   3'- -CUGGuUGUAGCAG------------GAGCUGCAGCUga -5'
29374 5' -52.7 NC_006151.1 + 20593 0.71 0.835489
Target:  5'- gGGCCGGCAcUCGUCCgcgGACGaCGGCg -3'
miRNA:   3'- -CUGGUUGU-AGCAGGag-CUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 18361 0.71 0.818328
Target:  5'- uGCUGAacUCGUCCUCGGCGUCcaGGCUc -3'
miRNA:   3'- cUGGUUguAGCAGGAGCUGCAG--CUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.