miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 3915 0.66 0.967428
Target:  5'- gGGCUGC-UCgGgCCAGAGCGggggcaggccgGGCGCg -3'
miRNA:   3'- gCUGAUGcAG-CgGGUCUUGCa----------CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 94048 0.66 0.970439
Target:  5'- gCGcCgcgGCGUCGCCgCGGAACaGcaucagcuggaUGGCGCu -3'
miRNA:   3'- -GCuGa--UGCAGCGG-GUCUUG-C-----------ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 72160 0.66 0.970439
Target:  5'- aGGCacuCGUCGCCgAGcAGCGgcggGACGa -3'
miRNA:   3'- gCUGau-GCAGCGGgUC-UUGCa---CUGCg -5'
29375 3' -53.5 NC_006151.1 + 70900 0.66 0.970439
Target:  5'- -cGCUGCGUCGUgCGcuGCcUGGCGCg -3'
miRNA:   3'- gcUGAUGCAGCGgGUcuUGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 57549 0.66 0.970439
Target:  5'- gGGC-ACGUCGCcgagcacgccCCAGAagccguccuugACGUaGGCGCa -3'
miRNA:   3'- gCUGaUGCAGCG----------GGUCU-----------UGCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 98013 0.66 0.970439
Target:  5'- aGGCgGCGcCGgCCAGGuccgcgGgGUGGCGCa -3'
miRNA:   3'- gCUGaUGCaGCgGGUCU------UgCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 91169 0.66 0.970439
Target:  5'- aGGCUcACGUcgggCGCCCgcgaggGGAGCaUGAUGCa -3'
miRNA:   3'- gCUGA-UGCA----GCGGG------UCUUGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 77884 0.66 0.967428
Target:  5'- cCGGCgUGCGcccccCGCUCAGcGGCGaGACGCg -3'
miRNA:   3'- -GCUG-AUGCa----GCGGGUC-UUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 64615 0.66 0.967428
Target:  5'- gCGGCgccGCGcCGCCggccgCGGGGCGcGGCGCc -3'
miRNA:   3'- -GCUGa--UGCaGCGG-----GUCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 85013 0.66 0.972147
Target:  5'- uCGACUcgcgcgacggccgcAUGUCGCgCAccuucauGGGCGUGACGa -3'
miRNA:   3'- -GCUGA--------------UGCAGCGgGU-------CUUGCACUGCg -5'
29375 3' -53.5 NC_006151.1 + 10925 0.66 0.973246
Target:  5'- gGGCccACGgCGCCgAGggUG-GGCGCg -3'
miRNA:   3'- gCUGa-UGCaGCGGgUCuuGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 63483 0.66 0.973246
Target:  5'- gCGGCgGCGgCGCCCgaAGAAgGUGGC-Ca -3'
miRNA:   3'- -GCUGaUGCaGCGGG--UCUUgCACUGcG- -5'
29375 3' -53.5 NC_006151.1 + 135159 0.66 0.975854
Target:  5'- cCGGCggGCG-CgGCCCGGA-CG-GGCGCc -3'
miRNA:   3'- -GCUGa-UGCaG-CGGGUCUuGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 73803 0.66 0.975854
Target:  5'- uCGGCgcccACGUcgcgcauggCGCCgAGGugGUcGGCGCa -3'
miRNA:   3'- -GCUGa---UGCA---------GCGGgUCUugCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 28871 0.66 0.975854
Target:  5'- cCGGC-GCGUC-CCCGGAggcGgGUGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGcGGGUCU---UgCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 28590 0.66 0.975854
Target:  5'- cCGGC-GCGUC-CCCGGAggcGgGUGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGcGGGUCU---UgCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 106674 0.66 0.975854
Target:  5'- aGGCcGCGgCGCUCGGcGCGccgGGCGCc -3'
miRNA:   3'- gCUGaUGCaGCGGGUCuUGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 137507 0.66 0.975602
Target:  5'- cCGACUuugGCGcCGCgCCGGGcgacgaggacuggGCGgacuggGACGCg -3'
miRNA:   3'- -GCUGA---UGCaGCG-GGUCU-------------UGCa-----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 5850 0.66 0.975348
Target:  5'- aGGCUGCGgagggggacgagCGCCCGGGGCcgccgGGgGCc -3'
miRNA:   3'- gCUGAUGCa-----------GCGGGUCUUGca---CUgCG- -5'
29375 3' -53.5 NC_006151.1 + 76793 0.66 0.973246
Target:  5'- uCGGCgcCGUacagCGCCCcggcgAGGGCG-GGCGCg -3'
miRNA:   3'- -GCUGauGCA----GCGGG-----UCUUGCaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.