miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 136722 1.02 0.01682
Target:  5'- gCGAC-ACGUCGCCCAGAACGUGACGCc -3'
miRNA:   3'- -GCUGaUGCAGCGGGUCUUGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 124761 0.79 0.418321
Target:  5'- gGACUcGCGccuccgCGCCUccgAGAGCGUGACGCg -3'
miRNA:   3'- gCUGA-UGCa-----GCGGG---UCUUGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 68098 0.78 0.427181
Target:  5'- aGGCUcGCGUCGCCCA--GCGUcaGGCGCa -3'
miRNA:   3'- gCUGA-UGCAGCGGGUcuUGCA--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 99396 0.76 0.530227
Target:  5'- aCGACUACGg-GCCCGGGcuggacuACGUG-CGCg -3'
miRNA:   3'- -GCUGAUGCagCGGGUCU-------UGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 54363 0.76 0.541172
Target:  5'- aCGAggACGUgGCCCGGGACuggaUGGCGCa -3'
miRNA:   3'- -GCUgaUGCAgCGGGUCUUGc---ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 88405 0.76 0.561259
Target:  5'- gCGGCcGCGagGCCCGGGACGUccGCGCg -3'
miRNA:   3'- -GCUGaUGCagCGGGUCUUGCAc-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 73020 0.76 0.561259
Target:  5'- -cGCUGCGagGCCCAGGgauugGCGgUGGCGCg -3'
miRNA:   3'- gcUGAUGCagCGGGUCU-----UGC-ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 65787 0.76 0.57138
Target:  5'- gCGGCgaugGCGcCGCCCGGcgcgGACGUGcCGCg -3'
miRNA:   3'- -GCUGa---UGCaGCGGGUC----UUGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 57158 0.74 0.632772
Target:  5'- gGGCgaggGCGUCccccggcgcgGCCCAGAAgucgggguCGUGGCGCg -3'
miRNA:   3'- gCUGa---UGCAG----------CGGGUCUU--------GCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 53758 0.74 0.653314
Target:  5'- uCGAgUACGcCGCCgAGAGCuUGGCGUa -3'
miRNA:   3'- -GCUgAUGCaGCGGgUCUUGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 115553 0.73 0.704217
Target:  5'- aCGGCgUAC-UCGCCCGcGGGCG-GGCGCg -3'
miRNA:   3'- -GCUG-AUGcAGCGGGU-CUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 102937 0.73 0.714249
Target:  5'- gCGGCUGCG-CGCgCuGGACGcGGCGCc -3'
miRNA:   3'- -GCUGAUGCaGCGgGuCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 122789 0.73 0.724211
Target:  5'- gCGGCUGCGcggccUCGCCCGacGAGCGccucgaGGCGCu -3'
miRNA:   3'- -GCUGAUGC-----AGCGGGU--CUUGCa-----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 117328 0.73 0.724211
Target:  5'- gGGCgGCGUCggccucggccuuGCCCAGGAagaaguaGUGGCGCa -3'
miRNA:   3'- gCUGaUGCAG------------CGGGUCUUg------CACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 36857 0.73 0.734094
Target:  5'- gGACUcgGCcUCGCCgGGGACGgcggGGCGCc -3'
miRNA:   3'- gCUGA--UGcAGCGGgUCUUGCa---CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 106850 0.73 0.738022
Target:  5'- aCGugUAC-UCGCCCGGcucgggccugacccuGGcCGUGACGCu -3'
miRNA:   3'- -GCugAUGcAGCGGGUC---------------UU-GCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 99055 0.72 0.753581
Target:  5'- gGACgcgUACGUgcgcgagcugCGCCCGGGcacCGUGGCGCg -3'
miRNA:   3'- gCUG---AUGCA----------GCGGGUCUu--GCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 123938 0.72 0.763168
Target:  5'- uCGGCcucgcCGaCGCCCGGGACG-GGCGCc -3'
miRNA:   3'- -GCUGau---GCaGCGGGUCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 78324 0.72 0.78198
Target:  5'- aGGCUggACGagCGcCCCGGGGCG-GGCGCg -3'
miRNA:   3'- gCUGA--UGCa-GC-GGGUCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 38159 0.71 0.791187
Target:  5'- gGACUcugucgcccuCGUCGCCCGcacCGUGGCGCc -3'
miRNA:   3'- gCUGAu---------GCAGCGGGUcuuGCACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.