miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 64615 0.66 0.967428
Target:  5'- gCGGCgccGCGcCGCCggccgCGGGGCGcGGCGCc -3'
miRNA:   3'- -GCUGa--UGCaGCGG-----GUCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 77884 0.66 0.967428
Target:  5'- cCGGCgUGCGcccccCGCUCAGcGGCGaGACGCg -3'
miRNA:   3'- -GCUG-AUGCa----GCGGGUC-UUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 141712 0.66 0.966801
Target:  5'- gGACgcggugcccgggGCGUUaauaCCCAGGGCGgaggGGCGCg -3'
miRNA:   3'- gCUGa-----------UGCAGc---GGGUCUUGCa---CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 27408 0.66 0.966484
Target:  5'- gGGCUcguaccaGUCgGCCCAGAcccgguccaugggcGCGgcgGACGCg -3'
miRNA:   3'- gCUGAug-----CAG-CGGGUCU--------------UGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 54585 0.66 0.965521
Target:  5'- uCGACUggaucgugugccucgGCGUgGuCCCGGuGCGccgGGCGCg -3'
miRNA:   3'- -GCUGA---------------UGCAgC-GGGUCuUGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 86122 0.66 0.965521
Target:  5'- cCGGCUACcUgGCCCuguacgauaGGGACGgcggggagcucgcgcUGACGCg -3'
miRNA:   3'- -GCUGAUGcAgCGGG---------UCUUGC---------------ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 106202 0.66 0.964206
Target:  5'- cCGGCggUGCGgcUCGCCCuccccgaccuGAugGUGGcCGCg -3'
miRNA:   3'- -GCUG--AUGC--AGCGGGu---------CUugCACU-GCG- -5'
29375 3' -53.5 NC_006151.1 + 129420 0.66 0.964206
Target:  5'- uCGGCgaggucgACGUCcgGCCCcaaguGGGCGgGGCGCa -3'
miRNA:   3'- -GCUGa------UGCAG--CGGGu----CUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 95218 0.66 0.964206
Target:  5'- gCGGCUGCGccgcaCGCCCucGAcCGaGGCGCc -3'
miRNA:   3'- -GCUGAUGCa----GCGGGu-CUuGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 137459 0.66 0.963536
Target:  5'- cCGACgACGgccucgaggaggCGCCCuGGGACGacGACGCc -3'
miRNA:   3'- -GCUGaUGCa-----------GCGGG-UCUUGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 95905 0.66 0.963197
Target:  5'- aCGGCcaugaugccgcgcgUGCaGUCGCCCgAGGGCGUG-CGg -3'
miRNA:   3'- -GCUG--------------AUG-CAGCGGG-UCUUGCACuGCg -5'
29375 3' -53.5 NC_006151.1 + 118195 0.67 0.960767
Target:  5'- cCGGCUucgccgggcACGUgGCCguGGugGcgGGCGCc -3'
miRNA:   3'- -GCUGA---------UGCAgCGGguCUugCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 59883 0.67 0.960767
Target:  5'- uGGCUgGCGaaggCGUCCAGGcgcGCGUcGCGCa -3'
miRNA:   3'- gCUGA-UGCa---GCGGGUCU---UGCAcUGCG- -5'
29375 3' -53.5 NC_006151.1 + 90732 0.67 0.960767
Target:  5'- gCGACggugGCGgcggCGCCCucgGGGGCGgcgggcacgGugGCg -3'
miRNA:   3'- -GCUGa---UGCa---GCGGG---UCUUGCa--------CugCG- -5'
29375 3' -53.5 NC_006151.1 + 74603 0.67 0.960767
Target:  5'- cCGAUga-GgCGCCgCAGGGCGUGcACGUg -3'
miRNA:   3'- -GCUGaugCaGCGG-GUCUUGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 99313 0.67 0.960767
Target:  5'- gGACcGCG-CGCCCcGccuGACG-GACGCg -3'
miRNA:   3'- gCUGaUGCaGCGGGuC---UUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 120368 0.67 0.960767
Target:  5'- gCGcCUACcagCGCCCGGAcACGgccgugGACGUg -3'
miRNA:   3'- -GCuGAUGca-GCGGGUCU-UGCa-----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 50608 0.67 0.960767
Target:  5'- gGGCcccGCGcCGCCgCGGcAGCGUGcACGCc -3'
miRNA:   3'- gCUGa--UGCaGCGG-GUC-UUGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 138668 0.67 0.957106
Target:  5'- aCGGCcaucUACGUgGCCCccAACGagacgGACGCg -3'
miRNA:   3'- -GCUG----AUGCAgCGGGucUUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 3996 0.67 0.957106
Target:  5'- gCGGCcACGUUGgCCGGGGCGaagagGGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGCgGGUCUUGCa----CU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.