Results 101 - 120 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29375 | 5' | -65.6 | NC_006151.1 | + | 17960 | 0.66 | 0.485954 |
Target: 5'- -gGCGCC-CGCCugCCGGCguccCAcGcGGCGCa -3' miRNA: 3'- cgCGCGGaGCGG--GGCCG----GUaC-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 10863 | 0.66 | 0.485954 |
Target: 5'- ----cCCUCGCCCCGGCCccccggcuuGGUGCc -3' miRNA: 3'- cgcgcGGAGCGGGGCCGGuac------CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 3681 | 0.67 | 0.442322 |
Target: 5'- gGgGCGgCggGCCCCGGgCGcGcGGCGCu -3' miRNA: 3'- -CgCGCgGagCGGGGCCgGUaC-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 134698 | 0.67 | 0.440623 |
Target: 5'- cGCGCGCCccgaugcagcacCGCCCCgcguGGCCuuc-GCGCg -3' miRNA: 3'- -CGCGCGGa-----------GCGGGG----CCGGuaccCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 3970 | 0.67 | 0.433863 |
Target: 5'- cGCGCggcgGCCUCggcgagccgGCCgCGGCCAcguuggccgGGGCGa -3' miRNA: 3'- -CGCG----CGGAG---------CGGgGCCGGUa--------CCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 118339 | 0.67 | 0.433863 |
Target: 5'- cCGCGCC-CGCCCucucgCGcGCCugcgagGcGGCGCg -3' miRNA: 3'- cGCGCGGaGCGGG-----GC-CGGua----C-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 75873 | 0.67 | 0.433863 |
Target: 5'- uGCGUGUC-CGCgUgGGUCAUGcGCGCg -3' miRNA: 3'- -CGCGCGGaGCGgGgCCGGUACcCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 99889 | 0.67 | 0.433863 |
Target: 5'- cGCGCGgaCCUgGCgCaGGUgcugaCGUGGGCGCg -3' miRNA: 3'- -CGCGC--GGAgCGgGgCCG-----GUACCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 83748 | 0.67 | 0.433863 |
Target: 5'- aGUGCGCCaguaCGCCaUCGGCUcgGGcacguacaGCGCc -3' miRNA: 3'- -CGCGCGGa---GCGG-GGCCGGuaCC--------CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 6917 | 0.67 | 0.433863 |
Target: 5'- uCGCGUCUacuuUGCauguCCGGCCccgaGGGCGCc -3' miRNA: 3'- cGCGCGGA----GCGg---GGCCGGua--CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 89633 | 0.67 | 0.442322 |
Target: 5'- aGCGUGUgcgCGCCCuugaCGGCCAccgagagGuGGCGCg -3' miRNA: 3'- -CGCGCGga-GCGGG----GCCGGUa------C-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 10909 | 0.67 | 0.442322 |
Target: 5'- gGCGCGgaCCggggucggGCCCaCGGCgCcgaggGUGGGCGCg -3' miRNA: 3'- -CGCGC--GGag------CGGG-GCCG-G-----UACCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 93348 | 0.67 | 0.442322 |
Target: 5'- cCGUcccacCCUCGCCCCaaggaugacGGCCGgaGGCGCg -3' miRNA: 3'- cGCGc----GGAGCGGGG---------CCGGUacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 75224 | 0.67 | 0.442322 |
Target: 5'- gGCGCGCgUCGgCCaCGuaggcGCCGaaGGCGCa -3' miRNA: 3'- -CGCGCGgAGCgGG-GC-----CGGUacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 130217 | 0.67 | 0.442322 |
Target: 5'- aCGCGCa--GCUCCGGCCAguaggccaGGGagcCGCa -3' miRNA: 3'- cGCGCGgagCGGGGCCGGUa-------CCC---GCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 100415 | 0.67 | 0.442322 |
Target: 5'- uGCGCGCCgacgcgggggCGCUgCGcGgCGUGauGGCGCa -3' miRNA: 3'- -CGCGCGGa---------GCGGgGC-CgGUAC--CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 86581 | 0.67 | 0.442322 |
Target: 5'- cGCGgGCg-CGCUCCGaGCUGcUGGcGCGCg -3' miRNA: 3'- -CGCgCGgaGCGGGGC-CGGU-ACC-CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 18736 | 0.67 | 0.442322 |
Target: 5'- uCGCGUCgUCGCCgCCgccggGGCCccacgGGGUGCc -3' miRNA: 3'- cGCGCGG-AGCGG-GG-----CCGGua---CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 8334 | 0.67 | 0.442322 |
Target: 5'- cGCGgGCCUCGaucgcgCCC-GCCGgacgcgGaGGCGCg -3' miRNA: 3'- -CGCgCGGAGCg-----GGGcCGGUa-----C-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 133451 | 0.67 | 0.433863 |
Target: 5'- gGCGCuCUUgGCCCCGGUCGaGGccCGCg -3' miRNA: 3'- -CGCGcGGAgCGGGGCCGGUaCCc-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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