miRNA display CGI


Results 141 - 160 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 86581 0.67 0.442322
Target:  5'- cGCGgGCg-CGCUCCGaGCUGcUGGcGCGCg -3'
miRNA:   3'- -CGCgCGgaGCGGGGC-CGGU-ACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 100415 0.67 0.442322
Target:  5'- uGCGCGCCgacgcgggggCGCUgCGcGgCGUGauGGCGCa -3'
miRNA:   3'- -CGCGCGGa---------GCGGgGC-CgGUAC--CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 130217 0.67 0.442322
Target:  5'- aCGCGCa--GCUCCGGCCAguaggccaGGGagcCGCa -3'
miRNA:   3'- cGCGCGgagCGGGGCCGGUa-------CCC---GCG- -5'
29375 5' -65.6 NC_006151.1 + 75224 0.67 0.442322
Target:  5'- gGCGCGCgUCGgCCaCGuaggcGCCGaaGGCGCa -3'
miRNA:   3'- -CGCGCGgAGCgGG-GC-----CGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 93348 0.67 0.442322
Target:  5'- cCGUcccacCCUCGCCCCaaggaugacGGCCGgaGGCGCg -3'
miRNA:   3'- cGCGc----GGAGCGGGG---------CCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 118339 0.67 0.433863
Target:  5'- cCGCGCC-CGCCCucucgCGcGCCugcgagGcGGCGCg -3'
miRNA:   3'- cGCGCGGaGCGGG-----GC-CGGua----C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 75873 0.67 0.433863
Target:  5'- uGCGUGUC-CGCgUgGGUCAUGcGCGCg -3'
miRNA:   3'- -CGCGCGGaGCGgGgCCGGUACcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 99889 0.67 0.433863
Target:  5'- cGCGCGgaCCUgGCgCaGGUgcugaCGUGGGCGCg -3'
miRNA:   3'- -CGCGC--GGAgCGgGgCCG-----GUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 69436 0.67 0.425498
Target:  5'- gGCGcCGCCgccguucgCGUCCuCGcgcGCCGcGGGCGCc -3'
miRNA:   3'- -CGC-GCGGa-------GCGGG-GC---CGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 116387 0.67 0.425498
Target:  5'- uGCGCucGCCgagCGCCUccuCGGCCAc-GGCGUu -3'
miRNA:   3'- -CGCG--CGGa--GCGGG---GCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 125243 0.67 0.425498
Target:  5'- -gGCG-CUC-CCCCGGCCcggcgGGGaCGCc -3'
miRNA:   3'- cgCGCgGAGcGGGGCCGGua---CCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 8721 0.67 0.425498
Target:  5'- --cCGCCgUCGCCUCGGuCCGaggagggGGGUGCc -3'
miRNA:   3'- cgcGCGG-AGCGGGGCC-GGUa------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 51122 0.67 0.425498
Target:  5'- uGCGgGCCUCGCgcagggcguCCCGGagcaCGUcGGGC-Cg -3'
miRNA:   3'- -CGCgCGGAGCG---------GGGCCg---GUA-CCCGcG- -5'
29375 5' -65.6 NC_006151.1 + 75623 0.67 0.425498
Target:  5'- cGCGCGCCgaGCCCaCGggcuuGCCGUcgucGGGgGCc -3'
miRNA:   3'- -CGCGCGGagCGGG-GC-----CGGUA----CCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 61569 0.67 0.428832
Target:  5'- --uCGCCUCGCuCCCGGaaAUGGGguucccgugcuuuuaCGCg -3'
miRNA:   3'- cgcGCGGAGCG-GGGCCggUACCC---------------GCG- -5'
29375 5' -65.6 NC_006151.1 + 83984 0.67 0.431343
Target:  5'- -gGCGuCCUUGaCCCUGGCCuUugaagucaaccucgGGGUGCg -3'
miRNA:   3'- cgCGC-GGAGC-GGGGCCGGuA--------------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 87294 0.67 0.433022
Target:  5'- aCGCGCCgccccccUCGCCCguggCGcacGCCGUGccGGCGCu -3'
miRNA:   3'- cGCGCGG-------AGCGGG----GC---CGGUAC--CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 133451 0.67 0.433863
Target:  5'- gGCGCuCUUgGCCCCGGUCGaGGccCGCg -3'
miRNA:   3'- -CGCGcGGAgCGGGGCCGGUaCCc-GCG- -5'
29375 5' -65.6 NC_006151.1 + 6917 0.67 0.433863
Target:  5'- uCGCGUCUacuuUGCauguCCGGCCccgaGGGCGCc -3'
miRNA:   3'- cGCGCGGA----GCGg---GGCCGGua--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 83748 0.67 0.433863
Target:  5'- aGUGCGCCaguaCGCCaUCGGCUcgGGcacguacaGCGCc -3'
miRNA:   3'- -CGCGCGGa---GCGG-GGCCGGuaCC--------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.