Results 161 - 180 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29375 | 5' | -65.6 | NC_006151.1 | + | 81545 | 0.67 | 0.41723 |
Target: 5'- gGCGCGCUcCGCggugcacaUGGCCGUGGuGCGg -3' miRNA: 3'- -CGCGCGGaGCGgg------GCCGGUACC-CGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 132816 | 0.67 | 0.41723 |
Target: 5'- aGCGCGuCCgggcuggcCGCCCgcgggaCGGCCAccacGGGCGg -3' miRNA: 3'- -CGCGC-GGa-------GCGGG------GCCGGUa---CCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 104875 | 0.67 | 0.425498 |
Target: 5'- aGCGCGCCacgCGCCUgcugcgcgaGGUgGUGGaCGCg -3' miRNA: 3'- -CGCGCGGa--GCGGGg--------CCGgUACCcGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 121770 | 0.67 | 0.425498 |
Target: 5'- -aGCGCUgCGaCCCC-GCgGUGGuGCGCg -3' miRNA: 3'- cgCGCGGaGC-GGGGcCGgUACC-CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 131803 | 0.67 | 0.425498 |
Target: 5'- aGCGCGCCaUCcuCCUCGGCCuc-GGCuaGCg -3' miRNA: 3'- -CGCGCGG-AGc-GGGGCCGGuacCCG--CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 69436 | 0.67 | 0.425498 |
Target: 5'- gGCGcCGCCgccguucgCGUCCuCGcgcGCCGcGGGCGCc -3' miRNA: 3'- -CGC-GCGGa-------GCGGG-GC---CGGUaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 116387 | 0.67 | 0.425498 |
Target: 5'- uGCGCucGCCgagCGCCUccuCGGCCAc-GGCGUu -3' miRNA: 3'- -CGCG--CGGa--GCGGG---GCCGGUacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 87294 | 0.67 | 0.433022 |
Target: 5'- aCGCGCCgccccccUCGCCCguggCGcacGCCGUGccGGCGCu -3' miRNA: 3'- cGCGCGG-------AGCGGG----GC---CGGUAC--CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 83984 | 0.67 | 0.431343 |
Target: 5'- -gGCGuCCUUGaCCCUGGCCuUugaagucaaccucgGGGUGCg -3' miRNA: 3'- cgCGC-GGAGC-GGGGCCGGuA--------------CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 61569 | 0.67 | 0.428832 |
Target: 5'- --uCGCCUCGCuCCCGGaaAUGGGguucccgugcuuuuaCGCg -3' miRNA: 3'- cgcGCGGAGCG-GGGCCggUACCC---------------GCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 75623 | 0.67 | 0.425498 |
Target: 5'- cGCGCGCCgaGCCCaCGggcuuGCCGUcgucGGGgGCc -3' miRNA: 3'- -CGCGCGGagCGGG-GC-----CGGUA----CCCgCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 51122 | 0.67 | 0.425498 |
Target: 5'- uGCGgGCCUCGCgcagggcguCCCGGagcaCGUcGGGC-Cg -3' miRNA: 3'- -CGCgCGGAGCG---------GGGCCg---GUA-CCCGcG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 8721 | 0.67 | 0.425498 |
Target: 5'- --cCGCCgUCGCCUCGGuCCGaggagggGGGUGCc -3' miRNA: 3'- cgcGCGG-AGCGGGGCC-GGUa------CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 125243 | 0.67 | 0.425498 |
Target: 5'- -gGCG-CUC-CCCCGGCCcggcgGGGaCGCc -3' miRNA: 3'- cgCGCgGAGcGGGGCCGGua---CCC-GCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 15336 | 0.68 | 0.385161 |
Target: 5'- cGCGCGuCCUCuCCCCgccGGUCAUcgaGGGCccGCu -3' miRNA: 3'- -CGCGC-GGAGcGGGG---CCGGUA---CCCG--CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 36376 | 0.68 | 0.385161 |
Target: 5'- aGCGgcagagGCCgggGCCCCcggcGGCCccGGGCGCu -3' miRNA: 3'- -CGCg-----CGGag-CGGGG----CCGGuaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 129445 | 0.68 | 0.385161 |
Target: 5'- aGUGgGCggggCGCa-CGGCCGUGGGCGg -3' miRNA: 3'- -CGCgCGga--GCGggGCCGGUACCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 4364 | 0.68 | 0.385161 |
Target: 5'- gGCGCagaggGCCUCGacggucgccuCCCCGGCgCggGGGUccGCg -3' miRNA: 3'- -CGCG-----CGGAGC----------GGGGCCG-GuaCCCG--CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 43867 | 0.68 | 0.385161 |
Target: 5'- aCGCacccuGCCUCGCCCCcGCUcgucgaGUcGGCGCg -3' miRNA: 3'- cGCG-----CGGAGCGGGGcCGG------UAcCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 2374 | 0.68 | 0.385161 |
Target: 5'- gGCGCGCaaCUCGgCCggcaGGCCcucgGGGcCGCg -3' miRNA: 3'- -CGCGCG--GAGCgGGg---CCGGua--CCC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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