miRNA display CGI


Results 181 - 200 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 58807 0.7 0.26742
Target:  5'- aGCGCGCCgcguaCGCgCCGGCCccGucgcggcacagcaGGUGCg -3'
miRNA:   3'- -CGCGCGGa----GCGgGGCCGGuaC-------------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 31682 0.7 0.268016
Target:  5'- -aGgGCCgggcCGCCgagCCGGCCGcgccauUGGGCGCc -3'
miRNA:   3'- cgCgCGGa---GCGG---GGCCGGU------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 9921 0.7 0.268016
Target:  5'- -gGCGCCUCggGCCUCGGagAUGGGgaCGCg -3'
miRNA:   3'- cgCGCGGAG--CGGGGCCggUACCC--GCG- -5'
29375 5' -65.6 NC_006151.1 + 104794 0.7 0.280162
Target:  5'- uGCGCGCgCUCGUgcgccgcgaCCUGGCgGcGGcGCGCg -3'
miRNA:   3'- -CGCGCG-GAGCG---------GGGCCGgUaCC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 63482 0.7 0.286397
Target:  5'- gGCgGCGgCggCGCCCgaagaaggUGGCCAgguggGGGCGCg -3'
miRNA:   3'- -CG-CGCgGa-GCGGG--------GCCGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 115547 0.7 0.274035
Target:  5'- aCGCGCacggcguaCUCGCCCgCGGgC--GGGCGCg -3'
miRNA:   3'- cGCGCG--------GAGCGGG-GCCgGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 140449 0.7 0.280162
Target:  5'- -gGCGCCU-GCCUCGGCgggauCAUGGacGCGCu -3'
miRNA:   3'- cgCGCGGAgCGGGGCCG-----GUACC--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 112980 0.7 0.274035
Target:  5'- cGCGCGCg-CGCCgCCGaGCCugGGGgGCu -3'
miRNA:   3'- -CGCGCGgaGCGG-GGC-CGGuaCCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 37227 0.7 0.262105
Target:  5'- cGCG-GCCUCcccgGCCCCGGCCccGGaGCccGCc -3'
miRNA:   3'- -CGCgCGGAG----CGGGGCCGGuaCC-CG--CG- -5'
29375 5' -65.6 NC_006151.1 + 119105 0.69 0.31921
Target:  5'- gGCGCGUacgugaGCCgcgcggCCGGCCucguggGGGCGCu -3'
miRNA:   3'- -CGCGCGgag---CGG------GGCCGGua----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 83260 0.69 0.305756
Target:  5'- uCGCGCCagcggCGCCCCGaGCUcaGGuaGCGCg -3'
miRNA:   3'- cGCGCGGa----GCGGGGC-CGGuaCC--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 115176 0.69 0.299193
Target:  5'- cGCGCGgCagggggCGCUCCaGCCAgcgcgccgcGGGCGCg -3'
miRNA:   3'- -CGCGCgGa-----GCGGGGcCGGUa--------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 69124 0.69 0.312428
Target:  5'- cCGCGCCUC-CgCgGGCa--GGGCGCg -3'
miRNA:   3'- cGCGCGGAGcGgGgCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 121684 0.69 0.305756
Target:  5'- aGCGgGCCga--CCCGGCCAUGGcGgaGCg -3'
miRNA:   3'- -CGCgCGGagcgGGGCCGGUACC-Cg-CG- -5'
29375 5' -65.6 NC_006151.1 + 92646 0.69 0.312428
Target:  5'- cGCGaCGCCggcaaggcgcUCGCCCugcugccggCGGCCG-GGGaCGCg -3'
miRNA:   3'- -CGC-GCGG----------AGCGGG---------GCCGGUaCCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 40030 0.69 0.305756
Target:  5'- -aGCGUCcgCGCCgCC-GCCggGGGCGCc -3'
miRNA:   3'- cgCGCGGa-GCGG-GGcCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 62181 0.69 0.312428
Target:  5'- gGCGgaGgC-CGCCCUGGCCGUGuucacgcugcuGGCGCu -3'
miRNA:   3'- -CGCg-CgGaGCGGGGCCGGUAC-----------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 138157 0.69 0.312428
Target:  5'- gGCGCGCgCUCgagGCCUucguggcggacgUGGCCAU-GGCGCc -3'
miRNA:   3'- -CGCGCG-GAG---CGGG------------GCCGGUAcCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 52472 0.69 0.312428
Target:  5'- -gGCGCCgguaggcCGCCgugaCGGCCucGGGCGCc -3'
miRNA:   3'- cgCGCGGa------GCGGg---GCCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 40505 0.69 0.299193
Target:  5'- cGCGCGgaUC-CCCCGGCCGgagGuGGCuGCg -3'
miRNA:   3'- -CGCGCggAGcGGGGCCGGUa--C-CCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.