Results 81 - 100 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29375 | 5' | -65.6 | NC_006151.1 | + | 86082 | 0.73 | 0.172995 |
Target: 5'- cGCGCGCg-CGCCgCCGccGCCAUGGG-GCc -3' miRNA: 3'- -CGCGCGgaGCGG-GGC--CGGUACCCgCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 39001 | 0.73 | 0.190115 |
Target: 5'- cGCGCGCCgcggCGCCCCGcuccGCCGcc-GCGCc -3' miRNA: 3'- -CGCGCGGa---GCGGGGC----CGGUaccCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 84442 | 0.73 | 0.1857 |
Target: 5'- cGCGCgGCCcaugUCcCCCCGcGCCAUGGaccGCGCg -3' miRNA: 3'- -CGCG-CGG----AGcGGGGC-CGGUACC---CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 105715 | 0.73 | 0.168935 |
Target: 5'- cGCGCGCCUCGa-CgGcGCCGUGcGCGCg -3' miRNA: 3'- -CGCGCGGAGCggGgC-CGGUACcCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 50007 | 0.73 | 0.165354 |
Target: 5'- uGCGCGCCgCGCgCgCGGCCcgcgcggcgcccccGGGCGCg -3' miRNA: 3'- -CGCGCGGaGCGgG-GCCGGua------------CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 101843 | 0.73 | 0.168935 |
Target: 5'- cGC-CGCCccCGCCCCGGCacccgGcGGCGCa -3' miRNA: 3'- -CGcGCGGa-GCGGGGCCGgua--C-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 30568 | 0.72 | 0.199221 |
Target: 5'- aCGCGCCgu-CCCgCGGCCccgucGGGCGCa -3' miRNA: 3'- cGCGCGGagcGGG-GCCGGua---CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 138717 | 0.72 | 0.203915 |
Target: 5'- uGCGCGCCgCGCgCgGGUCGUGuacGCGCg -3' miRNA: 3'- -CGCGCGGaGCGgGgCCGGUACc--CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 26374 | 0.72 | 0.203915 |
Target: 5'- gGCGCGCgUC-CCCCGGCgGgcGGCGUc -3' miRNA: 3'- -CGCGCGgAGcGGGGCCGgUacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 54595 | 0.72 | 0.194621 |
Target: 5'- cGUGUGCCUCggcgugGUCCCGGUgCGccGGGCGCg -3' miRNA: 3'- -CGCGCGGAG------CGGGGCCG-GUa-CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 84334 | 0.72 | 0.208705 |
Target: 5'- uGCGCgGCCUCGCCgaguacgucgCCGGCCcgcGGCGg -3' miRNA: 3'- -CGCG-CGGAGCGG----------GGCCGGuacCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 121345 | 0.72 | 0.203915 |
Target: 5'- uGCGCGaCCUCGag--GGCCAgacGGGCGCg -3' miRNA: 3'- -CGCGC-GGAGCggggCCGGUa--CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 84634 | 0.72 | 0.194621 |
Target: 5'- cGCgGCGCUggacaaCGCCauGGCCGcGGGCGCg -3' miRNA: 3'- -CG-CGCGGa-----GCGGggCCGGUaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 122794 | 0.72 | 0.213592 |
Target: 5'- uGCGCgGCCUCGCCCgacgaGcGCCucgaGGCGCu -3' miRNA: 3'- -CGCG-CGGAGCGGGg----C-CGGuac-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 138502 | 0.72 | 0.199221 |
Target: 5'- cGgGCGCCcgcugcaccuccUCGUCCUcggGGUgAUGGGCGCg -3' miRNA: 3'- -CgCGCGG------------AGCGGGG---CCGgUACCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 69686 | 0.72 | 0.208705 |
Target: 5'- aGCuGCGCCUCGCCgucgaugguggCCGccGCCggGGGCaGCa -3' miRNA: 3'- -CG-CGCGGAGCGG-----------GGC--CGGuaCCCG-CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 83339 | 0.72 | 0.213592 |
Target: 5'- gGCGCGCgUCcacgugcuCCCCGGCgCGcgcgcGGGCGCg -3' miRNA: 3'- -CGCGCGgAGc-------GGGGCCG-GUa----CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 83109 | 0.72 | 0.213592 |
Target: 5'- cGgGCGCC-CGCgCCGGUCGcagagcucGGGCGCc -3' miRNA: 3'- -CgCGCGGaGCGgGGCCGGUa-------CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 39462 | 0.72 | 0.213592 |
Target: 5'- aGUGCGCCgUGCgCUGGCCc-GGGUGCc -3' miRNA: 3'- -CGCGCGGaGCGgGGCCGGuaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 98339 | 0.72 | 0.203915 |
Target: 5'- cGCGgGCCgcgagaCGCCCgCGGgCGugcgcgggcucUGGGCGCg -3' miRNA: 3'- -CGCgCGGa-----GCGGG-GCCgGU-----------ACCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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