miRNA display CGI


Results 101 - 120 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 119037 0.72 0.218576
Target:  5'- cGgGCGCCaaggacggcggCGCCgCGGCCGccuccgcGGGCGCg -3'
miRNA:   3'- -CgCGCGGa----------GCGGgGCCGGUa------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 84334 0.72 0.208705
Target:  5'- uGCGCgGCCUCGCCgaguacgucgCCGGCCcgcGGCGg -3'
miRNA:   3'- -CGCG-CGGAGCGG----------GGCCGGuacCCGCg -5'
29375 5' -65.6 NC_006151.1 + 62448 0.72 0.218576
Target:  5'- cCGCGCCugcaUCGCCcaCCGcGCCcgGGGCaGCc -3'
miRNA:   3'- cGCGCGG----AGCGG--GGC-CGGuaCCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 98631 0.72 0.194166
Target:  5'- uGCGcCGCCUUcgacgagGCCCUGGC---GGGCGCg -3'
miRNA:   3'- -CGC-GCGGAG-------CGGGGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 30568 0.72 0.199221
Target:  5'- aCGCGCCgu-CCCgCGGCCccgucGGGCGCa -3'
miRNA:   3'- cGCGCGGagcGGG-GCCGGua---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 81389 0.72 0.194621
Target:  5'- cCGCGCCgcggCGCCCagguuGGCCA-GGGUGg -3'
miRNA:   3'- cGCGCGGa---GCGGGg----CCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 122794 0.72 0.213592
Target:  5'- uGCGCgGCCUCGCCCgacgaGcGCCucgaGGCGCu -3'
miRNA:   3'- -CGCG-CGGAGCGGGg----C-CGGuac-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 60696 0.72 0.218576
Target:  5'- cGCGCGCCcgccgCGCCCgccgcgaccuCGGCCccGaGGUGCc -3'
miRNA:   3'- -CGCGCGGa----GCGGG----------GCCGGuaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 138502 0.72 0.199221
Target:  5'- cGgGCGCCcgcugcaccuccUCGUCCUcggGGUgAUGGGCGCg -3'
miRNA:   3'- -CgCGCGG------------AGCGGGG---CCGgUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 98339 0.72 0.203915
Target:  5'- cGCGgGCCgcgagaCGCCCgCGGgCGugcgcgggcucUGGGCGCg -3'
miRNA:   3'- -CGCgCGGa-----GCGGG-GCCgGU-----------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 26374 0.72 0.203915
Target:  5'- gGCGCGCgUC-CCCCGGCgGgcGGCGUc -3'
miRNA:   3'- -CGCGCGgAGcGGGGCCGgUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 54595 0.72 0.194621
Target:  5'- cGUGUGCCUCggcgugGUCCCGGUgCGccGGGCGCg -3'
miRNA:   3'- -CGCGCGGAG------CGGGGCCG-GUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 17790 0.72 0.218576
Target:  5'- cGCcCGCUUCGCCCCcccGGaCCcccccuccUGGGCGCg -3'
miRNA:   3'- -CGcGCGGAGCGGGG---CC-GGu-------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 53512 0.72 0.218576
Target:  5'- gGUGCuccGCCgcgCGCCCCGugaGCCGcuccaGGGCGCg -3'
miRNA:   3'- -CGCG---CGGa--GCGGGGC---CGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 92141 0.72 0.218576
Target:  5'- cGCGCGCggCGCCaaGGCCAucaUGGcCGCg -3'
miRNA:   3'- -CGCGCGgaGCGGggCCGGU---ACCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 83109 0.72 0.213592
Target:  5'- cGgGCGCC-CGCgCCGGUCGcagagcucGGGCGCc -3'
miRNA:   3'- -CgCGCGGaGCGgGGCCGGUa-------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 39462 0.72 0.213592
Target:  5'- aGUGCGCCgUGCgCUGGCCc-GGGUGCc -3'
miRNA:   3'- -CGCGCGGaGCGgGGCCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 65512 0.72 0.208705
Target:  5'- aGCGCGCCUCcUCCgCGGCCAgcaGCGUc -3'
miRNA:   3'- -CGCGCGGAGcGGG-GCCGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 83339 0.72 0.213592
Target:  5'- gGCGCGCgUCcacgugcuCCCCGGCgCGcgcgcGGGCGCg -3'
miRNA:   3'- -CGCGCGgAGc-------GGGGCCG-GUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 139581 0.71 0.228321
Target:  5'- -aGCGCCUgggcucgCGCCCCcccgagcggcGGCCcguccGGGCGCg -3'
miRNA:   3'- cgCGCGGA-------GCGGGG----------CCGGua---CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.