miRNA display CGI


Results 121 - 140 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 52867 0.71 0.234129
Target:  5'- uGCGUgGCCUCGCgguaCCGGUCGaaGGCGCc -3'
miRNA:   3'- -CGCG-CGGAGCGg---GGCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 9037 0.71 0.228844
Target:  5'- cGCcCGCCggggCGCCCCGcgugcuCCggGGGCGCc -3'
miRNA:   3'- -CGcGCGGa---GCGGGGCc-----GGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 69886 0.71 0.238973
Target:  5'- cGCGCGCCcacgcgcagCGCCgCCGucgugaaGCCGucaaagUGGGCGCc -3'
miRNA:   3'- -CGCGCGGa--------GCGG-GGC-------CGGU------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 27406 0.71 0.230946
Target:  5'- aCGgG-CUCGUaccagucggcccagaCCCGGuCCAUGGGCGCg -3'
miRNA:   3'- cGCgCgGAGCG---------------GGGCC-GGUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 89719 0.71 0.234129
Target:  5'- gGCgGCGCCg-GCCgCGGCCgcggugGUGGGCGa -3'
miRNA:   3'- -CG-CGCGGagCGGgGCCGG------UACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 98124 0.71 0.234129
Target:  5'- cGCGCGCCgaGCCCaCGGUUaguGUGcccGGCGCg -3'
miRNA:   3'- -CGCGCGGagCGGG-GCCGG---UAC---CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 61469 0.71 0.234129
Target:  5'- uGCGgGCCgcgcaaCGCCgaGGCCGUGagcuGGCGCu -3'
miRNA:   3'- -CGCgCGGa-----GCGGggCCGGUAC----CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 73989 0.71 0.250601
Target:  5'- cCGCGUCcggCGCCaCCgaGGCCAggagGGGCGUc -3'
miRNA:   3'- cGCGCGGa--GCGG-GG--CCGGUa---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 84514 0.71 0.250601
Target:  5'- cGCGCGCCacuucaucgCGCCCCcguuccCCGUGGGCu- -3'
miRNA:   3'- -CGCGCGGa--------GCGGGGcc----GGUACCCGcg -5'
29375 5' -65.6 NC_006151.1 + 57115 0.71 0.229368
Target:  5'- cGCGCGCCgccgcgcccggcggUCGCCCCugcgcacgcggcgggGGCgA-GGGCGUc -3'
miRNA:   3'- -CGCGCGG--------------AGCGGGG---------------CCGgUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 56176 0.71 0.228844
Target:  5'- cGCGUGCuCUCGCUggCCGuGCCGccgGuGGCGCu -3'
miRNA:   3'- -CGCGCG-GAGCGG--GGC-CGGUa--C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 31592 0.71 0.239516
Target:  5'- gGCGCGCUccgCGCUCCcccGCCGccUGGGCGg -3'
miRNA:   3'- -CGCGCGGa--GCGGGGc--CGGU--ACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 85239 0.71 0.234129
Target:  5'- cGCGCugaGCCagGCgCUGGCCGagggcGGGCGCa -3'
miRNA:   3'- -CGCG---CGGagCGgGGCCGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 66882 0.71 0.22366
Target:  5'- gGCGCGCC-CgGCCCCGcGCCGgaGGaCGCc -3'
miRNA:   3'- -CGCGCGGaG-CGGGGC-CGGUacCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 54963 0.71 0.224689
Target:  5'- cGCGCGCCUCuGCCagcugcucaacaCGGCgccggugaaggugcuCGUcGGGCGCa -3'
miRNA:   3'- -CGCGCGGAG-CGGg-----------GCCG---------------GUA-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 104038 0.71 0.228844
Target:  5'- cGCGCGCa--GCgCCaGCUcUGGGCGCg -3'
miRNA:   3'- -CGCGCGgagCGgGGcCGGuACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 81893 0.71 0.234129
Target:  5'- -gGCGCCgaggCGCgCCGGUCGcGGcGCGCc -3'
miRNA:   3'- cgCGCGGa---GCGgGGCCGGUaCC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 84786 0.71 0.22366
Target:  5'- cGCGCGCCgccgaggaggCGCCCgaggcgaccgCGGCCGcggacgGGGcCGCg -3'
miRNA:   3'- -CGCGCGGa---------GCGGG----------GCCGGUa-----CCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 139581 0.71 0.228321
Target:  5'- -aGCGCCUgggcucgCGCCCCcccgagcggcGGCCcguccGGGCGCg -3'
miRNA:   3'- cgCGCGGA-------GCGGGG----------CCGGua---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 61878 0.71 0.234129
Target:  5'- cUGCGCCUgGaCCCUccaGGCCGUGGuGCuGCu -3'
miRNA:   3'- cGCGCGGAgC-GGGG---CCGGUACC-CG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.