miRNA display CGI


Results 141 - 160 of 468 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 76999 0.71 0.255725
Target:  5'- -aGCGCCgcgagggUgGCCCgCGaGCCGUGGaGCGCc -3'
miRNA:   3'- cgCGCGG-------AgCGGG-GC-CGGUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 6124 0.71 0.2563
Target:  5'- gGCG-GCCUCgugGCUCCGGCCGcGGcCGCg -3'
miRNA:   3'- -CGCgCGGAG---CGGGGCCGGUaCCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 41599 0.71 0.2563
Target:  5'- cGCGgaGCC-CGCCCCGGCCGcGccccggaagccGGCGUc -3'
miRNA:   3'- -CGCg-CGGaGCGGGGCCGGUaC-----------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 59325 0.71 0.2563
Target:  5'- cGCGCccccGCC-CGCCCCcagcgcgcucagGGCCGcgcgcacgGGGCGCc -3'
miRNA:   3'- -CGCG----CGGaGCGGGG------------CCGGUa-------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 47277 0.71 0.239516
Target:  5'- gGCGCGCagCGUCCgCGGCUgcugugauggGUGGGCGg -3'
miRNA:   3'- -CGCGCGgaGCGGG-GCCGG----------UACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 70082 0.71 0.2563
Target:  5'- aGCGCGUCUgCGCgUgggCGGCgAaGGGCGCg -3'
miRNA:   3'- -CGCGCGGA-GCGgG---GCCGgUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 69886 0.71 0.238973
Target:  5'- cGCGCGCCcacgcgcagCGCCgCCGucgugaaGCCGucaaagUGGGCGCc -3'
miRNA:   3'- -CGCGCGGa--------GCGG-GGC-------CGGU------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 85362 0.71 0.228844
Target:  5'- gGCGCGCCUgCGCguggucCCCGGCgcgaaCGUcGGCGCc -3'
miRNA:   3'- -CGCGCGGA-GCG------GGGCCG-----GUAcCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 61469 0.71 0.234129
Target:  5'- uGCGgGCCgcgcaaCGCCgaGGCCGUGagcuGGCGCu -3'
miRNA:   3'- -CGCgCGGa-----GCGGggCCGGUAC----CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 89719 0.71 0.234129
Target:  5'- gGCgGCGCCg-GCCgCGGCCgcggugGUGGGCGa -3'
miRNA:   3'- -CG-CGCGGagCGGgGCCGG------UACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 98124 0.71 0.234129
Target:  5'- cGCGCGCCgaGCCCaCGGUUaguGUGcccGGCGCg -3'
miRNA:   3'- -CGCGCGGagCGGG-GCCGG---UAC---CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 85239 0.71 0.234129
Target:  5'- cGCGCugaGCCagGCgCUGGCCGagggcGGGCGCa -3'
miRNA:   3'- -CGCG---CGGagCGgGGCCGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 66882 0.71 0.22366
Target:  5'- gGCGCGCC-CgGCCCCGcGCCGgaGGaCGCc -3'
miRNA:   3'- -CGCGCGGaG-CGGGGC-CGGUacCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 38381 0.7 0.262105
Target:  5'- -aGCGCCggCGCCggCGGCgGcGGGCGCc -3'
miRNA:   3'- cgCGCGGa-GCGGg-GCCGgUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 97937 0.7 0.262105
Target:  5'- cCGCGCC-CGCCCUcGUCGaGGGCGa -3'
miRNA:   3'- cGCGCGGaGCGGGGcCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 77888 0.7 0.265639
Target:  5'- cGUGCGCCccccgcUCagcggcgagacgcgGCCCaCGGCCGUgguggugaagggcGGGCGCg -3'
miRNA:   3'- -CGCGCGG------AG--------------CGGG-GCCGGUA-------------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 21474 0.7 0.26152
Target:  5'- cGCGuCGCCg-GCUCgggcaggCGGCCGggGGGCGCg -3'
miRNA:   3'- -CGC-GCGGagCGGG-------GCCGGUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 37227 0.7 0.262105
Target:  5'- cGCG-GCCUCcccgGCCCCGGCCccGGaGCccGCc -3'
miRNA:   3'- -CGCgCGGAG----CGGGGCCGGuaCC-CG--CG- -5'
29375 5' -65.6 NC_006151.1 + 50632 0.7 0.262105
Target:  5'- uGCaCGCCUCGgCgaCGGCCGcGGGCGg -3'
miRNA:   3'- -CGcGCGGAGCgGg-GCCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 74435 0.7 0.260935
Target:  5'- uGCGCGCCguugacgcgcaGCUCCGGCa---GGCGCu -3'
miRNA:   3'- -CGCGCGGag---------CGGGGCCGguacCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.