miRNA display CGI


Results 161 - 180 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 115547 0.7 0.274035
Target:  5'- aCGCGCacggcguaCUCGCCCgCGGgC--GGGCGCg -3'
miRNA:   3'- cGCGCG--------GAGCGGG-GCCgGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 6480 0.7 0.280162
Target:  5'- gGCGgGCCgagaGCCUCGGUgGgucGGGCGUc -3'
miRNA:   3'- -CGCgCGGag--CGGGGCCGgUa--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 73210 0.7 0.29274
Target:  5'- cGCGgGCCagGCCCgCGGgCAccugGGGCaGCa -3'
miRNA:   3'- -CGCgCGGagCGGG-GCCgGUa---CCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 140449 0.7 0.280162
Target:  5'- -gGCGCCU-GCCUCGGCgggauCAUGGacGCGCu -3'
miRNA:   3'- cgCGCGGAgCGGGGCCG-----GUACC--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 106375 0.7 0.280162
Target:  5'- cGCGCGCC-CGCCgCGGCgCccGcuGCGCg -3'
miRNA:   3'- -CGCGCGGaGCGGgGCCG-GuaCc-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 58872 0.7 0.286397
Target:  5'- gGCGCGCCgggucCGUCCaGGCCGUGuagaucccGGcCGCg -3'
miRNA:   3'- -CGCGCGGa----GCGGGgCCGGUAC--------CC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 63482 0.7 0.286397
Target:  5'- gGCgGCGgCggCGCCCgaagaaggUGGCCAgguggGGGCGCg -3'
miRNA:   3'- -CG-CGCgGa-GCGGG--------GCCGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 8966 0.7 0.274035
Target:  5'- cGCGCGCg-CGCCCCGGgaAgggucGGGCGa -3'
miRNA:   3'- -CGCGCGgaGCGGGGCCggUa----CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 118137 0.7 0.274035
Target:  5'- cGCaGCGCCgacgaCGCCgCGGCgGU-GGCGCc -3'
miRNA:   3'- -CG-CGCGGa----GCGGgGCCGgUAcCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 24873 0.7 0.274035
Target:  5'- cGUGUccGCCUCG-CCCGGCCGgcGGGC-Ca -3'
miRNA:   3'- -CGCG--CGGAGCgGGGCCGGUa-CCCGcG- -5'
29375 5' -65.6 NC_006151.1 + 50632 0.7 0.262105
Target:  5'- uGCaCGCCUCGgCgaCGGCCGcGGGCGg -3'
miRNA:   3'- -CGcGCGGAGCgGg-GCCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 121430 0.7 0.262105
Target:  5'- cGCGgGgCUCGCgCCGGCCucgcuGGUGCc -3'
miRNA:   3'- -CGCgCgGAGCGgGGCCGGuac--CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 56313 0.7 0.262105
Target:  5'- cGCGCgguGCCUgaGCCUgGGCCGguggcUGGaGCGCg -3'
miRNA:   3'- -CGCG---CGGAg-CGGGgCCGGU-----ACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 97937 0.7 0.262105
Target:  5'- cCGCGCC-CGCCCUcGUCGaGGGCGa -3'
miRNA:   3'- cGCGCGGaGCGGGGcCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 77888 0.7 0.265639
Target:  5'- cGUGCGCCccccgcUCagcggcgagacgcgGCCCaCGGCCGUgguggugaagggcGGGCGCg -3'
miRNA:   3'- -CGCGCGG------AG--------------CGGG-GCCGGUA-------------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58807 0.7 0.26742
Target:  5'- aGCGCGCCgcguaCGCgCCGGCCccGucgcggcacagcaGGUGCg -3'
miRNA:   3'- -CGCGCGGa----GCGgGGCCGGuaC-------------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 31682 0.7 0.268016
Target:  5'- -aGgGCCgggcCGCCgagCCGGCCGcgccauUGGGCGCc -3'
miRNA:   3'- cgCgCGGa---GCGG---GGCCGGU------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 9921 0.7 0.268016
Target:  5'- -gGCGCCUCggGCCUCGGagAUGGGgaCGCg -3'
miRNA:   3'- cgCGCGGAG--CGGGGCCggUACCC--GCG- -5'
29375 5' -65.6 NC_006151.1 + 113083 0.7 0.268016
Target:  5'- cGCGCgGCCgUCGCCgCC-GCCAccggGGGCGg -3'
miRNA:   3'- -CGCG-CGG-AGCGG-GGcCGGUa---CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 64353 0.7 0.270411
Target:  5'- cGCGgGCCgUCgGCCCCccagcgcacggucgaGGCCGUGGccagcccgcgGCGCa -3'
miRNA:   3'- -CGCgCGG-AG-CGGGG---------------CCGGUACC----------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.