Results 101 - 120 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29375 | 5' | -65.6 | NC_006151.1 | + | 67991 | 0.72 | 0.208705 |
Target: 5'- gGCcCGCCggCGCCgCGGCCAcGGGCucgGCg -3' miRNA: 3'- -CGcGCGGa-GCGGgGCCGGUaCCCG---CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 84334 | 0.72 | 0.208705 |
Target: 5'- uGCGCgGCCUCGCCgaguacgucgCCGGCCcgcGGCGg -3' miRNA: 3'- -CGCG-CGGAGCGG----------GGCCGGuacCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 69686 | 0.72 | 0.208705 |
Target: 5'- aGCuGCGCCUCGCCgucgaugguggCCGccGCCggGGGCaGCa -3' miRNA: 3'- -CG-CGCGGAGCGG-----------GGC--CGGuaCCCG-CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 83109 | 0.72 | 0.213592 |
Target: 5'- cGgGCGCC-CGCgCCGGUCGcagagcucGGGCGCc -3' miRNA: 3'- -CgCGCGGaGCGgGGCCGGUa-------CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 125183 | 0.72 | 0.213592 |
Target: 5'- -aGCGCCUCgGCCucgCCGGCguCGUGGGCcccGCg -3' miRNA: 3'- cgCGCGGAG-CGG---GGCCG--GUACCCG---CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 83339 | 0.72 | 0.213592 |
Target: 5'- gGCGCGCgUCcacgugcuCCCCGGCgCGcgcgcGGGCGCg -3' miRNA: 3'- -CGCGCGgAGc-------GGGGCCG-GUa----CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 135469 | 0.72 | 0.213592 |
Target: 5'- uGCGCGCCagcgugucCGCgCgGGCCAgGcGGCGCg -3' miRNA: 3'- -CGCGCGGa-------GCGgGgCCGGUaC-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 122794 | 0.72 | 0.213592 |
Target: 5'- uGCGCgGCCUCGCCCgacgaGcGCCucgaGGCGCu -3' miRNA: 3'- -CGCG-CGGAGCGGGg----C-CGGuac-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 39462 | 0.72 | 0.213592 |
Target: 5'- aGUGCGCCgUGCgCUGGCCc-GGGUGCc -3' miRNA: 3'- -CGCGCGGaGCGgGGCCGGuaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 64471 | 0.72 | 0.216571 |
Target: 5'- cGCGCGCCgccgcggcggggaCGCCCgCGGgCGcGGGCGg -3' miRNA: 3'- -CGCGCGGa------------GCGGG-GCCgGUaCCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 106688 | 0.72 | 0.217071 |
Target: 5'- gGCGCGCCggGCgCCGGCgaccuguacgcgccCGUGGGCa- -3' miRNA: 3'- -CGCGCGGagCGgGGCCG--------------GUACCCGcg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 75410 | 0.72 | 0.218576 |
Target: 5'- uGCGCGgguCCgggaGgCCCGG-CGUGGGCGCg -3' miRNA: 3'- -CGCGC---GGag--CgGGGCCgGUACCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 82617 | 0.72 | 0.218576 |
Target: 5'- cGCGCGCgggCGCCgCGGU---GGGCGCg -3' miRNA: 3'- -CGCGCGga-GCGGgGCCGguaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 17790 | 0.72 | 0.218576 |
Target: 5'- cGCcCGCUUCGCCCCcccGGaCCcccccuccUGGGCGCg -3' miRNA: 3'- -CGcGCGGAGCGGGG---CC-GGu-------ACCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 53512 | 0.72 | 0.218576 |
Target: 5'- gGUGCuccGCCgcgCGCCCCGugaGCCGcuccaGGGCGCg -3' miRNA: 3'- -CGCG---CGGa--GCGGGGC---CGGUa----CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 60696 | 0.72 | 0.218576 |
Target: 5'- cGCGCGCCcgccgCGCCCgccgcgaccuCGGCCccGaGGUGCc -3' miRNA: 3'- -CGCGCGGa----GCGGG----------GCCGGuaC-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 92141 | 0.72 | 0.218576 |
Target: 5'- cGCGCGCggCGCCaaGGCCAucaUGGcCGCg -3' miRNA: 3'- -CGCGCGgaGCGGggCCGGU---ACCcGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 62448 | 0.72 | 0.218576 |
Target: 5'- cCGCGCCugcaUCGCCcaCCGcGCCcgGGGCaGCc -3' miRNA: 3'- cGCGCGG----AGCGG--GGC-CGGuaCCCG-CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 119037 | 0.72 | 0.218576 |
Target: 5'- cGgGCGCCaaggacggcggCGCCgCGGCCGccuccgcGGGCGCg -3' miRNA: 3'- -CgCGCGGa----------GCGGgGCCGGUa------CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 66882 | 0.71 | 0.22366 |
Target: 5'- gGCGCGCC-CgGCCCCGcGCCGgaGGaCGCc -3' miRNA: 3'- -CGCGCGGaG-CGGGGC-CGGUacCC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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