miRNA display CGI


Results 101 - 120 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 67991 0.72 0.208705
Target:  5'- gGCcCGCCggCGCCgCGGCCAcGGGCucgGCg -3'
miRNA:   3'- -CGcGCGGa-GCGGgGCCGGUaCCCG---CG- -5'
29375 5' -65.6 NC_006151.1 + 84334 0.72 0.208705
Target:  5'- uGCGCgGCCUCGCCgaguacgucgCCGGCCcgcGGCGg -3'
miRNA:   3'- -CGCG-CGGAGCGG----------GGCCGGuacCCGCg -5'
29375 5' -65.6 NC_006151.1 + 69686 0.72 0.208705
Target:  5'- aGCuGCGCCUCGCCgucgaugguggCCGccGCCggGGGCaGCa -3'
miRNA:   3'- -CG-CGCGGAGCGG-----------GGC--CGGuaCCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 83109 0.72 0.213592
Target:  5'- cGgGCGCC-CGCgCCGGUCGcagagcucGGGCGCc -3'
miRNA:   3'- -CgCGCGGaGCGgGGCCGGUa-------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 125183 0.72 0.213592
Target:  5'- -aGCGCCUCgGCCucgCCGGCguCGUGGGCcccGCg -3'
miRNA:   3'- cgCGCGGAG-CGG---GGCCG--GUACCCG---CG- -5'
29375 5' -65.6 NC_006151.1 + 83339 0.72 0.213592
Target:  5'- gGCGCGCgUCcacgugcuCCCCGGCgCGcgcgcGGGCGCg -3'
miRNA:   3'- -CGCGCGgAGc-------GGGGCCG-GUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 135469 0.72 0.213592
Target:  5'- uGCGCGCCagcgugucCGCgCgGGCCAgGcGGCGCg -3'
miRNA:   3'- -CGCGCGGa-------GCGgGgCCGGUaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 122794 0.72 0.213592
Target:  5'- uGCGCgGCCUCGCCCgacgaGcGCCucgaGGCGCu -3'
miRNA:   3'- -CGCG-CGGAGCGGGg----C-CGGuac-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 39462 0.72 0.213592
Target:  5'- aGUGCGCCgUGCgCUGGCCc-GGGUGCc -3'
miRNA:   3'- -CGCGCGGaGCGgGGCCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 64471 0.72 0.216571
Target:  5'- cGCGCGCCgccgcggcggggaCGCCCgCGGgCGcGGGCGg -3'
miRNA:   3'- -CGCGCGGa------------GCGGG-GCCgGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 106688 0.72 0.217071
Target:  5'- gGCGCGCCggGCgCCGGCgaccuguacgcgccCGUGGGCa- -3'
miRNA:   3'- -CGCGCGGagCGgGGCCG--------------GUACCCGcg -5'
29375 5' -65.6 NC_006151.1 + 75410 0.72 0.218576
Target:  5'- uGCGCGgguCCgggaGgCCCGG-CGUGGGCGCg -3'
miRNA:   3'- -CGCGC---GGag--CgGGGCCgGUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 82617 0.72 0.218576
Target:  5'- cGCGCGCgggCGCCgCGGU---GGGCGCg -3'
miRNA:   3'- -CGCGCGga-GCGGgGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 17790 0.72 0.218576
Target:  5'- cGCcCGCUUCGCCCCcccGGaCCcccccuccUGGGCGCg -3'
miRNA:   3'- -CGcGCGGAGCGGGG---CC-GGu-------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 53512 0.72 0.218576
Target:  5'- gGUGCuccGCCgcgCGCCCCGugaGCCGcuccaGGGCGCg -3'
miRNA:   3'- -CGCG---CGGa--GCGGGGC---CGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 60696 0.72 0.218576
Target:  5'- cGCGCGCCcgccgCGCCCgccgcgaccuCGGCCccGaGGUGCc -3'
miRNA:   3'- -CGCGCGGa----GCGGG----------GCCGGuaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 92141 0.72 0.218576
Target:  5'- cGCGCGCggCGCCaaGGCCAucaUGGcCGCg -3'
miRNA:   3'- -CGCGCGgaGCGGggCCGGU---ACCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 62448 0.72 0.218576
Target:  5'- cCGCGCCugcaUCGCCcaCCGcGCCcgGGGCaGCc -3'
miRNA:   3'- cGCGCGG----AGCGG--GGC-CGGuaCCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 119037 0.72 0.218576
Target:  5'- cGgGCGCCaaggacggcggCGCCgCGGCCGccuccgcGGGCGCg -3'
miRNA:   3'- -CgCGCGGa----------GCGGgGCCGGUa------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 66882 0.71 0.22366
Target:  5'- gGCGCGCC-CgGCCCCGcGCCGgaGGaCGCc -3'
miRNA:   3'- -CGCGCGGaG-CGGGGC-CGGUacCC-GCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.