Results 141 - 160 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29375 | 5' | -65.6 | NC_006151.1 | + | 47277 | 0.71 | 0.239516 |
Target: 5'- gGCGCGCagCGUCCgCGGCUgcugugauggGUGGGCGg -3' miRNA: 3'- -CGCGCGgaGCGGG-GCCGG----------UACCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 66530 | 0.71 | 0.245006 |
Target: 5'- cGCGCGCCgCGCUCU--UCggGGGCGCg -3' miRNA: 3'- -CGCGCGGaGCGGGGccGGuaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 39637 | 0.71 | 0.250036 |
Target: 5'- cCGCGCCggGCCCCGGaCCccGGucccgcugccgccGCGCg -3' miRNA: 3'- cGCGCGGagCGGGGCC-GGuaCC-------------CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 73989 | 0.71 | 0.250601 |
Target: 5'- cCGCGUCcggCGCCaCCgaGGCCAggagGGGCGUc -3' miRNA: 3'- cGCGCGGa--GCGG-GG--CCGGUa---CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 84514 | 0.71 | 0.250601 |
Target: 5'- cGCGCGCCacuucaucgCGCCCCcguuccCCGUGGGCu- -3' miRNA: 3'- -CGCGCGGa--------GCGGGGcc----GGUACCCGcg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 123010 | 0.71 | 0.250601 |
Target: 5'- gGCGCGCCccCGCCggcggacgCCGuGgCGUGGGCGg -3' miRNA: 3'- -CGCGCGGa-GCGG--------GGC-CgGUACCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 128813 | 0.71 | 0.250601 |
Target: 5'- gGCGCGCgUgGCCCCGuaCGc-GGCGCu -3' miRNA: 3'- -CGCGCGgAgCGGGGCcgGUacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 15174 | 0.71 | 0.254008 |
Target: 5'- cGCGCGCCcugcgccgCGCCCUcuuugacuuuuacGCCAUGGGCu- -3' miRNA: 3'- -CGCGCGGa-------GCGGGGc------------CGGUACCCGcg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 76999 | 0.71 | 0.255725 |
Target: 5'- -aGCGCCgcgagggUgGCCCgCGaGCCGUGGaGCGCc -3' miRNA: 3'- cgCGCGG-------AgCGGG-GC-CGGUACC-CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 59325 | 0.71 | 0.2563 |
Target: 5'- cGCGCccccGCC-CGCCCCcagcgcgcucagGGCCGcgcgcacgGGGCGCc -3' miRNA: 3'- -CGCG----CGGaGCGGGG------------CCGGUa-------CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 41599 | 0.71 | 0.2563 |
Target: 5'- cGCGgaGCC-CGCCCCGGCCGcGccccggaagccGGCGUc -3' miRNA: 3'- -CGCg-CGGaGCGGGGCCGGUaC-----------CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 6124 | 0.71 | 0.2563 |
Target: 5'- gGCG-GCCUCgugGCUCCGGCCGcGGcCGCg -3' miRNA: 3'- -CGCgCGGAG---CGGGGCCGGUaCCcGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 70082 | 0.71 | 0.2563 |
Target: 5'- aGCGCGUCUgCGCgUgggCGGCgAaGGGCGCg -3' miRNA: 3'- -CGCGCGGA-GCGgG---GCCGgUaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 74435 | 0.7 | 0.260935 |
Target: 5'- uGCGCGCCguugacgcgcaGCUCCGGCa---GGCGCu -3' miRNA: 3'- -CGCGCGGag---------CGGGGCCGguacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 21474 | 0.7 | 0.26152 |
Target: 5'- cGCGuCGCCg-GCUCgggcaggCGGCCGggGGGCGCg -3' miRNA: 3'- -CGC-GCGGagCGGG-------GCCGGUa-CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 37227 | 0.7 | 0.262105 |
Target: 5'- cGCG-GCCUCcccgGCCCCGGCCccGGaGCccGCc -3' miRNA: 3'- -CGCgCGGAG----CGGGGCCGGuaCC-CG--CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 38381 | 0.7 | 0.262105 |
Target: 5'- -aGCGCCggCGCCggCGGCgGcGGGCGCc -3' miRNA: 3'- cgCGCGGa-GCGGg-GCCGgUaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 50632 | 0.7 | 0.262105 |
Target: 5'- uGCaCGCCUCGgCgaCGGCCGcGGGCGg -3' miRNA: 3'- -CGcGCGGAGCgGg-GCCGGUaCCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 56313 | 0.7 | 0.262105 |
Target: 5'- cGCGCgguGCCUgaGCCUgGGCCGguggcUGGaGCGCg -3' miRNA: 3'- -CGCG---CGGAg-CGGGgCCGGU-----ACC-CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 97937 | 0.7 | 0.262105 |
Target: 5'- cCGCGCC-CGCCCUcGUCGaGGGCGa -3' miRNA: 3'- cGCGCGGaGCGGGGcCGGUaCCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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