miRNA display CGI


Results 121 - 140 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 3970 0.67 0.433863
Target:  5'- cGCGCggcgGCCUCggcgagccgGCCgCGGCCAcguuggccgGGGCGa -3'
miRNA:   3'- -CGCG----CGGAG---------CGGgGCCGGUa--------CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 87294 0.67 0.433022
Target:  5'- aCGCGCCgccccccUCGCCCguggCGcacGCCGUGccGGCGCu -3'
miRNA:   3'- cGCGCGG-------AGCGGG----GC---CGGUAC--CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 83984 0.67 0.431343
Target:  5'- -gGCGuCCUUGaCCCUGGCCuUugaagucaaccucgGGGUGCg -3'
miRNA:   3'- cgCGC-GGAGC-GGGGCCGGuA--------------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 61569 0.67 0.428832
Target:  5'- --uCGCCUCGCuCCCGGaaAUGGGguucccgugcuuuuaCGCg -3'
miRNA:   3'- cgcGCGGAGCG-GGGCCggUACCC---------------GCG- -5'
29375 5' -65.6 NC_006151.1 + 104875 0.67 0.425498
Target:  5'- aGCGCGCCacgCGCCUgcugcgcgaGGUgGUGGaCGCg -3'
miRNA:   3'- -CGCGCGGa--GCGGGg--------CCGgUACCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 121770 0.67 0.425498
Target:  5'- -aGCGCUgCGaCCCC-GCgGUGGuGCGCg -3'
miRNA:   3'- cgCGCGGaGC-GGGGcCGgUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 131803 0.67 0.425498
Target:  5'- aGCGCGCCaUCcuCCUCGGCCuc-GGCuaGCg -3'
miRNA:   3'- -CGCGCGG-AGc-GGGGCCGGuacCCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 69436 0.67 0.425498
Target:  5'- gGCGcCGCCgccguucgCGUCCuCGcgcGCCGcGGGCGCc -3'
miRNA:   3'- -CGC-GCGGa-------GCGGG-GC---CGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 116387 0.67 0.425498
Target:  5'- uGCGCucGCCgagCGCCUccuCGGCCAc-GGCGUu -3'
miRNA:   3'- -CGCG--CGGa--GCGGG---GCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 125243 0.67 0.425498
Target:  5'- -gGCG-CUC-CCCCGGCCcggcgGGGaCGCc -3'
miRNA:   3'- cgCGCgGAGcGGGGCCGGua---CCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 8721 0.67 0.425498
Target:  5'- --cCGCCgUCGCCUCGGuCCGaggagggGGGUGCc -3'
miRNA:   3'- cgcGCGG-AGCGGGGCC-GGUa------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 51122 0.67 0.425498
Target:  5'- uGCGgGCCUCGCgcagggcguCCCGGagcaCGUcGGGC-Cg -3'
miRNA:   3'- -CGCgCGGAGCG---------GGGCCg---GUA-CCCGcG- -5'
29375 5' -65.6 NC_006151.1 + 75623 0.67 0.425498
Target:  5'- cGCGCGCCgaGCCCaCGggcuuGCCGUcgucGGGgGCc -3'
miRNA:   3'- -CGCGCGGagCGGG-GC-----CGGUA----CCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 70984 0.67 0.41723
Target:  5'- -aGCaGCCaggacUCgGCCgUGGCCAucgUGGGCGCc -3'
miRNA:   3'- cgCG-CGG-----AG-CGGgGCCGGU---ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 95893 0.67 0.41723
Target:  5'- -aGCGCCUUGagcaCGGCCAUGaugccGCGCg -3'
miRNA:   3'- cgCGCGGAGCggg-GCCGGUACc----CGCG- -5'
29375 5' -65.6 NC_006151.1 + 4697 0.67 0.41723
Target:  5'- ---gGCCUCGCCggCGGCCccgcuguagAUGaGGCGCa -3'
miRNA:   3'- cgcgCGGAGCGGg-GCCGG---------UAC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 35090 0.67 0.41723
Target:  5'- cGCGUGCCgagcaugCGCCUCGcGCCc---GCGCg -3'
miRNA:   3'- -CGCGCGGa------GCGGGGC-CGGuaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 59293 0.67 0.41723
Target:  5'- aGCGCGgCguggCGCCCgCGGCuCAgcGGGCc- -3'
miRNA:   3'- -CGCGCgGa---GCGGG-GCCG-GUa-CCCGcg -5'
29375 5' -65.6 NC_006151.1 + 81545 0.67 0.41723
Target:  5'- gGCGCGCUcCGCggugcacaUGGCCGUGGuGCGg -3'
miRNA:   3'- -CGCGCGGaGCGgg------GCCGGUACC-CGCg -5'
29375 5' -65.6 NC_006151.1 + 132816 0.67 0.41723
Target:  5'- aGCGCGuCCgggcuggcCGCCCgcgggaCGGCCAccacGGGCGg -3'
miRNA:   3'- -CGCGC-GGa-------GCGGG------GCCGGUa---CCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.