miRNA display CGI


Results 141 - 160 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 78142 0.67 0.416408
Target:  5'- cGgGCGCCUcggacgaCGCCUCGGCCgccGUGGuCGa -3'
miRNA:   3'- -CgCGCGGA-------GCGGGGCCGG---UACCcGCg -5'
29375 5' -65.6 NC_006151.1 + 28143 0.67 0.416408
Target:  5'- cCGCGCCUC-UCCCGGucgauccCCGUcGGCGUc -3'
miRNA:   3'- cGCGCGGAGcGGGGCC-------GGUAcCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 83501 0.67 0.412316
Target:  5'- aGCGCGCCagcgggaagcacacCGUCgCGGCCAccGGGUGg -3'
miRNA:   3'- -CGCGCGGa-------------GCGGgGCCGGUa-CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 28768 0.67 0.40906
Target:  5'- aGCGUGCCagGaCCCGaGUCGgcgGGGCGg -3'
miRNA:   3'- -CGCGCGGagCgGGGC-CGGUa--CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 81266 0.67 0.40906
Target:  5'- gGCGaGCagCGCCUCGGCgGggaucucGGGCGCg -3'
miRNA:   3'- -CGCgCGgaGCGGGGCCGgUa------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 112674 0.67 0.40906
Target:  5'- aGCGCucgcugGCCcCGCCCUGGCUGgcggacuacGcGGCGCu -3'
miRNA:   3'- -CGCG------CGGaGCGGGGCCGGUa--------C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 11020 0.67 0.40906
Target:  5'- cGCcCGCucgCUCGCCgggCCGGCCGgccGGGgGCc -3'
miRNA:   3'- -CGcGCG---GAGCGG---GGCCGGUa--CCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 67277 0.67 0.40906
Target:  5'- cGCGCGCCUgCGCCgCUGguGCCGcgacGCGCg -3'
miRNA:   3'- -CGCGCGGA-GCGG-GGC--CGGUacc-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 88456 0.67 0.40906
Target:  5'- cGCGUGCggCGCCCgagcucguCGGCCAc-GGUGCu -3'
miRNA:   3'- -CGCGCGgaGCGGG--------GCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 106422 0.67 0.40906
Target:  5'- cGCuGCGCgUCGCCgaCUGGaCCGaGGGcCGCu -3'
miRNA:   3'- -CG-CGCGgAGCGG--GGCC-GGUaCCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 142573 0.67 0.408249
Target:  5'- gGCGCGCuCUCcucuccgGUCCCGGCg--GGGCu- -3'
miRNA:   3'- -CGCGCG-GAG-------CGGGGCCGguaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 92701 0.67 0.408249
Target:  5'- cGCGCGCCgagCGCgaguucaUCCagcacgugguGGCCAUGcucacgccGGCGCg -3'
miRNA:   3'- -CGCGCGGa--GCG-------GGG----------CCGGUAC--------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 135832 0.67 0.406629
Target:  5'- aGCGCGCC--GCCCCGGCgucacguucugccuCAccGGGCa- -3'
miRNA:   3'- -CGCGCGGagCGGGGCCG--------------GUa-CCCGcg -5'
29375 5' -65.6 NC_006151.1 + 9469 0.67 0.404207
Target:  5'- cCGCGUC-CGCUUCGGCCccccgcggccgcggcGUGGGagaGCg -3'
miRNA:   3'- cGCGCGGaGCGGGGCCGG---------------UACCCg--CG- -5'
29375 5' -65.6 NC_006151.1 + 137265 0.67 0.404207
Target:  5'- cGCGCGCCcggUGCCCgCgggcacgcucgaggcGGCCAUGcGCGg -3'
miRNA:   3'- -CGCGCGGa--GCGGG-G---------------CCGGUACcCGCg -5'
29375 5' -65.6 NC_006151.1 + 134994 0.67 0.400991
Target:  5'- gGCGgGCg-CGUCuuGGCgG-GGGCGCg -3'
miRNA:   3'- -CGCgCGgaGCGGggCCGgUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 3871 0.67 0.400991
Target:  5'- gGgGCGCCcgcCGCCgCCGGCgcc-GGCGCu -3'
miRNA:   3'- -CgCGCGGa--GCGG-GGCCGguacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 14398 0.67 0.400991
Target:  5'- cGCGCGuCCgUCGCCuaGGUgAgucgGGGgGCu -3'
miRNA:   3'- -CGCGC-GG-AGCGGggCCGgUa---CCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 86326 0.67 0.400991
Target:  5'- cCGUG-CUCG-CCCGcGCCGUGGGCcCg -3'
miRNA:   3'- cGCGCgGAGCgGGGC-CGGUACCCGcG- -5'
29375 5' -65.6 NC_006151.1 + 115920 0.67 0.400991
Target:  5'- gGCGCugaaCUCGUCCUcgcgcaGGCCcgccGGGCGCg -3'
miRNA:   3'- -CGCGcg--GAGCGGGG------CCGGua--CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.