miRNA display CGI


Results 101 - 120 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 38381 0.7 0.262105
Target:  5'- -aGCGCCggCGCCggCGGCgGcGGGCGCc -3'
miRNA:   3'- cgCGCGGa-GCGGg-GCCGgUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 38962 0.69 0.333104
Target:  5'- gGCGCucacCUUCGaCCCGGCCGcccuGGCGCa -3'
miRNA:   3'- -CGCGc---GGAGCgGGGCCGGUac--CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 39001 0.73 0.190115
Target:  5'- cGCGCGCCgcggCGCCCCGcuccGCCGcc-GCGCc -3'
miRNA:   3'- -CGCGCGGa---GCGGGGC----CGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 39129 0.76 0.114709
Target:  5'- aGgGCGCCcCGCgCCCGGCC-UGGGaccCGCg -3'
miRNA:   3'- -CgCGCGGaGCG-GGGCCGGuACCC---GCG- -5'
29375 5' -65.6 NC_006151.1 + 39396 0.68 0.377403
Target:  5'- cCGCGga-CGgCCCGGCCGUGGGgGa -3'
miRNA:   3'- cGCGCggaGCgGGGCCGGUACCCgCg -5'
29375 5' -65.6 NC_006151.1 + 39462 0.72 0.213592
Target:  5'- aGUGCGCCgUGCgCUGGCCc-GGGUGCc -3'
miRNA:   3'- -CGCGCGGaGCGgGGCCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 39637 0.71 0.250036
Target:  5'- cCGCGCCggGCCCCGGaCCccGGucccgcugccgccGCGCg -3'
miRNA:   3'- cGCGCGGagCGGGGCC-GGuaCC-------------CGCG- -5'
29375 5' -65.6 NC_006151.1 + 39773 0.66 0.477059
Target:  5'- gGCGcCGCCUUcggGCaCCgcgCGGCCAaccgcUGGGgGCu -3'
miRNA:   3'- -CGC-GCGGAG---CG-GG---GCCGGU-----ACCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 39965 0.68 0.354766
Target:  5'- cGgGCGCCgUCGCC---GCCGcGGGCGCc -3'
miRNA:   3'- -CgCGCGG-AGCGGggcCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 40030 0.69 0.305756
Target:  5'- -aGCGUCcgCGCCgCC-GCCggGGGCGCc -3'
miRNA:   3'- cgCGCGGa-GCGG-GGcCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 40417 0.75 0.123458
Target:  5'- gGCG-GCCUCGguccCCUCGGCCcgGcGGCGCu -3'
miRNA:   3'- -CGCgCGGAGC----GGGGCCGGuaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 40458 0.67 0.393025
Target:  5'- -gGCGCCUgcCuCCCCGGCCcgGuGGCc- -3'
miRNA:   3'- cgCGCGGA--GcGGGGCCGGuaC-CCGcg -5'
29375 5' -65.6 NC_006151.1 + 40505 0.69 0.299193
Target:  5'- cGCGCGgaUC-CCCCGGCCGgagGuGGCuGCg -3'
miRNA:   3'- -CGCGCggAGcGGGGCCGGUa--C-CCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 41599 0.71 0.2563
Target:  5'- cGCGgaGCC-CGCCCCGGCCGcGccccggaagccGGCGUc -3'
miRNA:   3'- -CGCg-CGGaGCGGGGCCGGUaC-----------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 43867 0.68 0.385161
Target:  5'- aCGCacccuGCCUCGCCCCcGCUcgucgaGUcGGCGCg -3'
miRNA:   3'- cGCG-----CGGAGCGGGGcCGG------UAcCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 45183 0.71 0.234129
Target:  5'- gGCGUGCC-CGCCaccacggaCGGCgAcgGGGUGCg -3'
miRNA:   3'- -CGCGCGGaGCGGg-------GCCGgUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 45562 0.72 0.194166
Target:  5'- gGCGCGCCcgggccaUCGUCCCGGgacggcCCGaGGGgGCg -3'
miRNA:   3'- -CGCGCGG-------AGCGGGGCC------GGUaCCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 46576 0.68 0.36975
Target:  5'- cCGCGCaggGCCCgacgggCGGCCGUGcugaGGCGCg -3'
miRNA:   3'- cGCGCGgagCGGG------GCCGGUAC----CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 46717 0.69 0.340216
Target:  5'- -gGUGCCUCggggGCCggggCCGGCCcgGGGUcgGCg -3'
miRNA:   3'- cgCGCGGAG----CGG----GGCCGGuaCCCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 47277 0.71 0.239516
Target:  5'- gGCGCGCagCGUCCgCGGCUgcugugauggGUGGGCGg -3'
miRNA:   3'- -CGCGCGgaGCGGG-GCCGG----------UACCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.