miRNA display CGI


Results 121 - 140 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 48774 0.72 0.208705
Target:  5'- cCGaCGCCUcCGCCCCGccccccgacCCcgGGGCGCc -3'
miRNA:   3'- cGC-GCGGA-GCGGGGCc--------GGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 48892 0.66 0.468246
Target:  5'- cGCGCGCCU-GCgCUGGCCGaguaccGcGGcCGCu -3'
miRNA:   3'- -CGCGCGGAgCGgGGCCGGUa-----C-CC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 49142 0.8 0.059912
Target:  5'- cCGCGCC-CGCCCaCGGCUGccuggaggccUGGGCGCg -3'
miRNA:   3'- cGCGCGGaGCGGG-GCCGGU----------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 49217 0.69 0.3395
Target:  5'- gGCGCGggguccccggcucCCaCGCCCCGcUCGgcUGGGCGCg -3'
miRNA:   3'- -CGCGC-------------GGaGCGGGGCcGGU--ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 49582 0.79 0.071491
Target:  5'- cGCGCucGCCggCGCCCCGGCCAgc-GCGCu -3'
miRNA:   3'- -CGCG--CGGa-GCGGGGCCGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 50007 0.73 0.165354
Target:  5'- uGCGCGCCgCGCgCgCGGCCcgcgcggcgcccccGGGCGCg -3'
miRNA:   3'- -CGCGCGGaGCGgG-GCCGGua------------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 50094 0.69 0.326102
Target:  5'- gGCGCGCgUacgcgaucaGCUCCGGuCCGcGGuGCGCg -3'
miRNA:   3'- -CGCGCGgAg--------CGGGGCC-GGUaCC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 50363 0.66 0.468246
Target:  5'- cCGCGUCUC-CgCCGGCgG-GGGCGa -3'
miRNA:   3'- cGCGCGGAGcGgGGCCGgUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 50437 0.73 0.180948
Target:  5'- uGCGCGCCggCGgCCUGGgcaccgcCCGcGGGCGCu -3'
miRNA:   3'- -CGCGCGGa-GCgGGGCC-------GGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 50632 0.7 0.262105
Target:  5'- uGCaCGCCUCGgCgaCGGCCGcGGGCGg -3'
miRNA:   3'- -CGcGCGGAGCgGg-GCCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 51122 0.67 0.425498
Target:  5'- uGCGgGCCUCGCgcagggcguCCCGGagcaCGUcGGGC-Cg -3'
miRNA:   3'- -CGCgCGGAGCG---------GGGCCg---GUA-CCCGcG- -5'
29375 5' -65.6 NC_006151.1 + 51283 0.74 0.149892
Target:  5'- aGCGCGcCCUCggggGCCgCCGGCCA-GGuccGCGCg -3'
miRNA:   3'- -CGCGC-GGAG----CGG-GGCCGGUaCC---CGCG- -5'
29375 5' -65.6 NC_006151.1 + 52261 0.75 0.132822
Target:  5'- uGCGCGuacaCCUCGCUCgUGGUCucgGGGCGCg -3'
miRNA:   3'- -CGCGC----GGAGCGGG-GCCGGua-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 52372 0.68 0.377403
Target:  5'- gGCGCGCCcccgggGCCCgcgggGGCgGcGGGCGCc -3'
miRNA:   3'- -CGCGCGGag----CGGGg----CCGgUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 52472 0.69 0.312428
Target:  5'- -gGCGCCgguaggcCGCCgugaCGGCCucGGGCGCc -3'
miRNA:   3'- cgCGCGGa------GCGGg---GCCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 52757 0.68 0.354766
Target:  5'- cGCGCGCCUCGCagcgcagcgCCgCGGCguccUGGuCGCg -3'
miRNA:   3'- -CGCGCGGAGCG---------GG-GCCGgu--ACCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 52867 0.71 0.234129
Target:  5'- uGCGUgGCCUCGCgguaCCGGUCGaaGGCGCc -3'
miRNA:   3'- -CGCG-CGGAGCGg---GGCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 52940 0.66 0.468246
Target:  5'- cUGCGCgUCGCCC--GCCAccuUGaGGUGCg -3'
miRNA:   3'- cGCGCGgAGCGGGgcCGGU---AC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 53512 0.72 0.218576
Target:  5'- gGUGCuccGCCgcgCGCCCCGugaGCCGcuccaGGGCGCg -3'
miRNA:   3'- -CGCG---CGGa--GCGGGGC---CGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 54398 0.67 0.393025
Target:  5'- cGCGCGCgCg-GCCUCGGCgccGaGGCGCu -3'
miRNA:   3'- -CGCGCG-GagCGGGGCCGguaC-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.