miRNA display CGI


Results 141 - 160 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 54448 0.66 0.477059
Target:  5'- -gGCGCC-CGCCgUGGCCGa--GCGCc -3'
miRNA:   3'- cgCGCGGaGCGGgGCCGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 54595 0.72 0.194621
Target:  5'- cGUGUGCCUCggcgugGUCCCGGUgCGccGGGCGCg -3'
miRNA:   3'- -CGCGCGGAG------CGGGGCCG-GUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 54782 0.68 0.368991
Target:  5'- cGCGUGCagcuguaCUacgaGCCCCGGCacc-GGCGCg -3'
miRNA:   3'- -CGCGCG-------GAg---CGGGGCCGguacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 54963 0.71 0.224689
Target:  5'- cGCGCGCCUCuGCCagcugcucaacaCGGCgccggugaaggugcuCGUcGGGCGCa -3'
miRNA:   3'- -CGCGCGGAG-CGGg-----------GCCG---------------GUA-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 55421 0.67 0.393025
Target:  5'- uGCGCGCCgCGCa--GGC---GGGCGCg -3'
miRNA:   3'- -CGCGCGGaGCGgggCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 55453 0.76 0.114709
Target:  5'- gGCGcCGCCg-GCCCC-GCCGggGGGCGCg -3'
miRNA:   3'- -CGC-GCGGagCGGGGcCGGUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 56176 0.71 0.228844
Target:  5'- cGCGUGCuCUCGCUggCCGuGCCGccgGuGGCGCu -3'
miRNA:   3'- -CGCGCG-GAGCGG--GGC-CGGUa--C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 56313 0.7 0.262105
Target:  5'- cGCGCgguGCCUgaGCCUgGGCCGguggcUGGaGCGCg -3'
miRNA:   3'- -CGCG---CGGAg-CGGGgCCGGU-----ACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 56595 0.66 0.450874
Target:  5'- gGUGCGgaCgCGCCCCGGC----GGCGCg -3'
miRNA:   3'- -CGCGCg-GaGCGGGGCCGguacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 57115 0.71 0.229368
Target:  5'- cGCGCGCCgccgcgcccggcggUCGCCCCugcgcacgcggcgggGGCgA-GGGCGUc -3'
miRNA:   3'- -CGCGCGG--------------AGCGGGG---------------CCGgUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 57244 0.66 0.477059
Target:  5'- cGCGCgGCCUCggcguccgcgcgGCCCucgaCGGCCucgcgcagcaGGGCGUc -3'
miRNA:   3'- -CGCG-CGGAG------------CGGG----GCCGGua--------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 57591 0.69 0.330992
Target:  5'- gGCGCacgugaccaggccgGCCUCGgCCgCGGCCGccucgacGGCGCg -3'
miRNA:   3'- -CGCG--------------CGGAGCgGG-GCCGGUac-----CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 57747 0.68 0.377403
Target:  5'- gGCGCGCCgcagcCGCUCgUGGCCc-GGGCa- -3'
miRNA:   3'- -CGCGCGGa----GCGGG-GCCGGuaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 57990 0.68 0.354766
Target:  5'- aGCGCGCCgcggacCGCCuCCGGCgc-GGcCGCg -3'
miRNA:   3'- -CGCGCGGa-----GCGG-GGCCGguaCCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 58173 0.66 0.503975
Target:  5'- -aGCGCCaccagCGCCgCGuugcucacGCCGUGGGC-Ca -3'
miRNA:   3'- cgCGCGGa----GCGGgGC--------CGGUACCCGcG- -5'
29375 5' -65.6 NC_006151.1 + 58240 0.78 0.079045
Target:  5'- cGCGCGCCgccaCGCgCCGGCCcgcGGGcCGCa -3'
miRNA:   3'- -CGCGCGGa---GCGgGGCCGGua-CCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 58299 0.69 0.326102
Target:  5'- uCGCucaUCUCGCCCCGGCguuuCAgcgGcGGCGCg -3'
miRNA:   3'- cGCGc--GGAGCGGGGCCG----GUa--C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58392 0.77 0.094134
Target:  5'- -aGCGCggCGCagCCGGCCAUGGcGCGCa -3'
miRNA:   3'- cgCGCGgaGCGg-GGCCGGUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 58428 0.66 0.468246
Target:  5'- uGCGgcaGCCaCGCCUCGGUggCGUGcGCGCg -3'
miRNA:   3'- -CGCg--CGGaGCGGGGCCG--GUACcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58629 0.66 0.503975
Target:  5'- cGCaGCGgCUCGUagaaGGCCAgcgccgggaGGGCGCg -3'
miRNA:   3'- -CG-CGCgGAGCGggg-CCGGUa--------CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.