miRNA display CGI


Results 161 - 180 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 58684 0.66 0.450874
Target:  5'- cCGCGCCgugCGCgCCGcGCCAca-GCGCc -3'
miRNA:   3'- cGCGCGGa--GCGgGGC-CGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58807 0.7 0.26742
Target:  5'- aGCGCGCCgcguaCGCgCCGGCCccGucgcggcacagcaGGUGCg -3'
miRNA:   3'- -CGCGCGGa----GCGgGGCCGGuaC-------------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58872 0.7 0.286397
Target:  5'- gGCGCGCCgggucCGUCCaGGCCGUGuagaucccGGcCGCg -3'
miRNA:   3'- -CGCGCGGa----GCGGGgCCGGUAC--------CC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 58916 0.66 0.477059
Target:  5'- aCGCGCUccccCGCCgCGGCCGUcauaGCGCc -3'
miRNA:   3'- cGCGCGGa---GCGGgGCCGGUAcc--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 59293 0.67 0.41723
Target:  5'- aGCGCGgCguggCGCCCgCGGCuCAgcGGGCc- -3'
miRNA:   3'- -CGCGCgGa---GCGGG-GCCG-GUa-CCCGcg -5'
29375 5' -65.6 NC_006151.1 + 59325 0.71 0.2563
Target:  5'- cGCGCccccGCC-CGCCCCcagcgcgcucagGGCCGcgcgcacgGGGCGCc -3'
miRNA:   3'- -CGCG----CGGaGCGGGG------------CCGGUa-------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 59829 0.75 0.126509
Target:  5'- cGCGaUGUCggcCGCCaCCGGCCGguccgggGGGCGCa -3'
miRNA:   3'- -CGC-GCGGa--GCGG-GGCCGGUa------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 60088 0.66 0.494927
Target:  5'- cGCGCGCCgccgcgaaCGCCgggCGGCagc-GGCGCu -3'
miRNA:   3'- -CGCGCGGa-------GCGGg--GCCGguacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 60696 0.72 0.218576
Target:  5'- cGCGCGCCcgccgCGCCCgccgcgaccuCGGCCccGaGGUGCc -3'
miRNA:   3'- -CGCGCGGa----GCGGG----------GCCGGuaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 61217 0.66 0.503975
Target:  5'- aGCaGCGCCgUCGUcuugCCCGaGcCCAUcGGaGCGCg -3'
miRNA:   3'- -CG-CGCGG-AGCG----GGGC-C-GGUA-CC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 61469 0.71 0.234129
Target:  5'- uGCGgGCCgcgcaaCGCCgaGGCCGUGagcuGGCGCu -3'
miRNA:   3'- -CGCgCGGa-----GCGGggCCGGUAC----CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 61569 0.67 0.428832
Target:  5'- --uCGCCUCGCuCCCGGaaAUGGGguucccgugcuuuuaCGCg -3'
miRNA:   3'- cgcGCGGAGCG-GGGCCggUACCC---------------GCG- -5'
29375 5' -65.6 NC_006151.1 + 61744 0.66 0.454321
Target:  5'- -gGCGCa-CGCCCUguacgcggucgcgggGGCCGUGGuGCuGCg -3'
miRNA:   3'- cgCGCGgaGCGGGG---------------CCGGUACC-CG-CG- -5'
29375 5' -65.6 NC_006151.1 + 61878 0.71 0.234129
Target:  5'- cUGCGCCUgGaCCCUccaGGCCGUGGuGCuGCu -3'
miRNA:   3'- cGCGCGGAgC-GGGG---CCGGUACC-CG-CG- -5'
29375 5' -65.6 NC_006151.1 + 62066 0.77 0.091594
Target:  5'- cGCGCGCCgucgugacgaacgUCGUCCucggcgcgguCGGCC-UGGGCGCg -3'
miRNA:   3'- -CGCGCGG-------------AGCGGG----------GCCGGuACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 62181 0.69 0.312428
Target:  5'- gGCGgaGgC-CGCCCUGGCCGUGuucacgcugcuGGCGCu -3'
miRNA:   3'- -CGCg-CgGaGCGGGGCCGGUAC-----------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 62448 0.72 0.218576
Target:  5'- cCGCGCCugcaUCGCCcaCCGcGCCcgGGGCaGCc -3'
miRNA:   3'- cGCGCGG----AGCGG--GGC-CGGuaCCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 63482 0.7 0.286397
Target:  5'- gGCgGCGgCggCGCCCgaagaaggUGGCCAgguggGGGCGCg -3'
miRNA:   3'- -CG-CGCgGa-GCGGG--------GCCGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 63619 0.77 0.094134
Target:  5'- aGCGCGCgCUCGCCCgaGGCCcaGGGCa- -3'
miRNA:   3'- -CGCGCG-GAGCGGGg-CCGGuaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 63808 0.78 0.079045
Target:  5'- -aGCGCCUCG-CCgGGCCccgGGGCGCc -3'
miRNA:   3'- cgCGCGGAGCgGGgCCGGua-CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.