miRNA display CGI


Results 81 - 100 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 119527 0.74 0.142837
Target:  5'- cCGCGCCUCGCgCCCcGCC-UGcGCGCa -3'
miRNA:   3'- cGCGCGGAGCG-GGGcCGGuACcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 119105 0.69 0.31921
Target:  5'- gGCGCGUacgugaGCCgcgcggCCGGCCucguggGGGCGCu -3'
miRNA:   3'- -CGCGCGgag---CGG------GGCCGGua----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 119037 0.72 0.218576
Target:  5'- cGgGCGCCaaggacggcggCGCCgCGGCCGccuccgcGGGCGCg -3'
miRNA:   3'- -CgCGCGGa----------GCGGgGCCGGUa------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 118741 0.69 0.340216
Target:  5'- aCGUGCUggGCCCggCGGCCGUGccacGCGCg -3'
miRNA:   3'- cGCGCGGagCGGG--GCCGGUACc---CGCG- -5'
29375 5' -65.6 NC_006151.1 + 118448 0.77 0.096501
Target:  5'- cGCGCGgCUCGgCCUGGCCGcGGacGCGCa -3'
miRNA:   3'- -CGCGCgGAGCgGGGCCGGUaCC--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 118339 0.67 0.433863
Target:  5'- cCGCGCC-CGCCCucucgCGcGCCugcgagGcGGCGCg -3'
miRNA:   3'- cGCGCGGaGCGGG-----GC-CGGua----C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 118137 0.7 0.274035
Target:  5'- cGCaGCGCCgacgaCGCCgCGGCgGU-GGCGCc -3'
miRNA:   3'- -CG-CGCGGa----GCGGgGCCGgUAcCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 117792 0.66 0.450874
Target:  5'- gGgGCGCCaCG-CCCGGCg--GGGCGg -3'
miRNA:   3'- -CgCGCGGaGCgGGGCCGguaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 117547 0.68 0.36975
Target:  5'- aCGCGgCgacgCGCCgCGGCCAgaaGGGCu- -3'
miRNA:   3'- cGCGCgGa---GCGGgGCCGGUa--CCCGcg -5'
29375 5' -65.6 NC_006151.1 + 117295 0.66 0.476174
Target:  5'- cGCGCGCgagcugcucggcgCUCGCCac-GCCGaGGGCGg -3'
miRNA:   3'- -CGCGCG-------------GAGCGGggcCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 116929 0.69 0.333104
Target:  5'- gGC-CGuCCUCGUCgCgGGCCAgguugagGGGCGUg -3'
miRNA:   3'- -CGcGC-GGAGCGG-GgCCGGUa------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 116387 0.67 0.425498
Target:  5'- uGCGCucGCCgagCGCCUccuCGGCCAc-GGCGUu -3'
miRNA:   3'- -CGCG--CGGa--GCGGG---GCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 115920 0.67 0.400991
Target:  5'- gGCGCugaaCUCGUCCUcgcgcaGGCCcgccGGGCGCg -3'
miRNA:   3'- -CGCGcg--GAGCGGGG------CCGGua--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 115547 0.7 0.274035
Target:  5'- aCGCGCacggcguaCUCGCCCgCGGgC--GGGCGCg -3'
miRNA:   3'- cGCGCG--------GAGCGGG-GCCgGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 115176 0.69 0.299193
Target:  5'- cGCGCGgCagggggCGCUCCaGCCAgcgcgccgcGGGCGCg -3'
miRNA:   3'- -CGCGCgGa-----GCGGGGcCGGUa--------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 115131 0.76 0.114709
Target:  5'- cGCGCGCgUgCGCCUCGGCCAgcacGCGCc -3'
miRNA:   3'- -CGCGCGgA-GCGGGGCCGGUacc-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 114915 0.74 0.142837
Target:  5'- gGCGCacggccccgGCgUCGCgCUCGGCCuccgggGUGGGCGCg -3'
miRNA:   3'- -CGCG---------CGgAGCG-GGGCCGG------UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 114675 0.66 0.450874
Target:  5'- -aGCGCCgcgaagGCCUCGuGCUcgaaGGGCGCg -3'
miRNA:   3'- cgCGCGGag----CGGGGC-CGGua--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 114169 0.66 0.485954
Target:  5'- cGCGCGgcCCUCGUgCUGGCCuac-GUGCa -3'
miRNA:   3'- -CGCGC--GGAGCGgGGCCGGuaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 114131 0.73 0.181376
Target:  5'- cGUGCGCCgccgccgaGCCgCGGCUc-GGGCGCa -3'
miRNA:   3'- -CGCGCGGag------CGGgGCCGGuaCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.