miRNA display CGI


Results 101 - 120 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 113667 0.66 0.494927
Target:  5'- -gGCGCagaUCGCCgCCGagaaccGCUucgagGGGCGCg -3'
miRNA:   3'- cgCGCGg--AGCGG-GGC------CGGua---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 113083 0.7 0.268016
Target:  5'- cGCGCgGCCgUCGCCgCC-GCCAccggGGGCGg -3'
miRNA:   3'- -CGCG-CGG-AGCGG-GGcCGGUa---CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 112980 0.7 0.274035
Target:  5'- cGCGCGCg-CGCCgCCGaGCCugGGGgGCu -3'
miRNA:   3'- -CGCGCGgaGCGG-GGC-CGGuaCCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 112716 0.66 0.450874
Target:  5'- uGUGCGCCaagGCCCUGGCCugccccccGuGCGCc -3'
miRNA:   3'- -CGCGCGGag-CGGGGCCGGuac-----C-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 112674 0.67 0.40906
Target:  5'- aGCGCucgcugGCCcCGCCCUGGCUGgcggacuacGcGGCGCu -3'
miRNA:   3'- -CGCG------CGGaGCGGGGCCGGUa--------C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 112434 0.75 0.132822
Target:  5'- cCGCGCCgccgcCGCCgCGcGCCAUGGGCu- -3'
miRNA:   3'- cGCGCGGa----GCGGgGC-CGGUACCCGcg -5'
29375 5' -65.6 NC_006151.1 + 112190 0.75 0.132822
Target:  5'- uCGCGCCgCGCCCgcaGcGCCuccccGUGGGCGCa -3'
miRNA:   3'- cGCGCGGaGCGGGg--C-CGG-----UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 111315 0.66 0.468246
Target:  5'- gGCG-GCCgcgUGCCCgGGCac-GGGCGa -3'
miRNA:   3'- -CGCgCGGa--GCGGGgCCGguaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 109662 0.66 0.459516
Target:  5'- uGC-CGCCaccgcCGCCCCcucagccGCUAUGGGCGa -3'
miRNA:   3'- -CGcGCGGa----GCGGGGc------CGGUACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 106992 0.66 0.503975
Target:  5'- cGCGUGCCUgGCgCCgcagcuggagCGGCUcucGGCGCu -3'
miRNA:   3'- -CGCGCGGAgCG-GG----------GCCGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 106781 0.67 0.400991
Target:  5'- -aGCGCCUgGaCCUGGCCGcgGcGGCGg -3'
miRNA:   3'- cgCGCGGAgCgGGGCCGGUa-C-CCGCg -5'
29375 5' -65.6 NC_006151.1 + 106688 0.72 0.217071
Target:  5'- gGCGCGCCggGCgCCGGCgaccuguacgcgccCGUGGGCa- -3'
miRNA:   3'- -CGCGCGGagCGgGGCCG--------------GUACCCGcg -5'
29375 5' -65.6 NC_006151.1 + 106644 0.66 0.450874
Target:  5'- -aGCGCCUggaCGCCgCGGCgCAcGuGCGCg -3'
miRNA:   3'- cgCGCGGA---GCGGgGCCG-GUaCcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 106512 0.75 0.120475
Target:  5'- cGCGCGCCgugccgggCGCgCUGGCCAccuucaccgugcUGGcGCGCa -3'
miRNA:   3'- -CGCGCGGa-------GCGgGGCCGGU------------ACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 106422 0.67 0.40906
Target:  5'- cGCuGCGCgUCGCCgaCUGGaCCGaGGGcCGCu -3'
miRNA:   3'- -CG-CGCGgAGCGG--GGCC-GGUaCCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 106375 0.7 0.280162
Target:  5'- cGCGCGCC-CGCCgCGGCgCccGcuGCGCg -3'
miRNA:   3'- -CGCGCGGaGCGGgGCCG-GuaCc-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 106207 0.66 0.480608
Target:  5'- gGUGCGgCUCGCCCUccccgaccugaugguGGCCGcgGuGGCcgGCg -3'
miRNA:   3'- -CGCGCgGAGCGGGG---------------CCGGUa-C-CCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 105715 0.73 0.168935
Target:  5'- cGCGCGCCUCGa-CgGcGCCGUGcGCGCg -3'
miRNA:   3'- -CGCGCGGAGCggGgC-CGGUACcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 105405 0.69 0.333104
Target:  5'- cCGCGCCU-GCCC--GCCAaguucgugGGGCGCa -3'
miRNA:   3'- cGCGCGGAgCGGGgcCGGUa-------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 105306 0.68 0.347436
Target:  5'- -gGCGCCUCcgaggacgagGCCCCccuGGCCGaGGcccGCGCg -3'
miRNA:   3'- cgCGCGGAG----------CGGGG---CCGGUaCC---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.