miRNA display CGI


Results 121 - 140 of 468 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 104875 0.67 0.425498
Target:  5'- aGCGCGCCacgCGCCUgcugcgcgaGGUgGUGGaCGCg -3'
miRNA:   3'- -CGCGCGGa--GCGGGg--------CCGgUACCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 104794 0.7 0.280162
Target:  5'- uGCGCGCgCUCGUgcgccgcgaCCUGGCgGcGGcGCGCg -3'
miRNA:   3'- -CGCGCG-GAGCG---------GGGCCGgUaCC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 104530 0.66 0.459516
Target:  5'- cGCG-GCUUCcccgaguacgagGCCgagCUGGCCGcccUGGGCGCg -3'
miRNA:   3'- -CGCgCGGAG------------CGG---GGCCGGU---ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 104410 0.74 0.149892
Target:  5'- gGCGUGCUggcccgcgcCGCCgCCGGCaugGGGCGCu -3'
miRNA:   3'- -CGCGCGGa--------GCGG-GGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 104188 0.66 0.468246
Target:  5'- cGCGCGCUcggCGCCaacgCCGaGaCCGUGaccacGGCGCu -3'
miRNA:   3'- -CGCGCGGa--GCGG----GGC-C-GGUAC-----CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 104038 0.71 0.228844
Target:  5'- cGCGCGCa--GCgCCaGCUcUGGGCGCg -3'
miRNA:   3'- -CGCGCGgagCGgGGcCGGuACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 103965 0.69 0.338071
Target:  5'- gGCGCGCCagCGCgUcggcgagcuggaggCGGCCGUGgcggccguggaGGCGCg -3'
miRNA:   3'- -CGCGCGGa-GCGgG--------------GCCGGUAC-----------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 103890 0.68 0.36975
Target:  5'- gGCGCGCCaccUgGCgCUGGagGUGGcGCGCg -3'
miRNA:   3'- -CGCGCGG---AgCGgGGCCggUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 103698 0.66 0.494927
Target:  5'- uGCGCGCCgccguggaGCaCCCGGagcUGGGCu- -3'
miRNA:   3'- -CGCGCGGag------CG-GGGCCgguACCCGcg -5'
29375 5' -65.6 NC_006151.1 + 103538 0.7 0.29274
Target:  5'- gGCGCGCUgguggGCgCCGGgCAgccgcucgGGGCGCu -3'
miRNA:   3'- -CGCGCGGag---CGgGGCCgGUa-------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 103394 0.66 0.494927
Target:  5'- cGCGCGCUgcugggcgacuUUGCcacgcugggCCCGGCgGUGGaccugcucGCGCa -3'
miRNA:   3'- -CGCGCGG-----------AGCG---------GGGCCGgUACC--------CGCG- -5'
29375 5' -65.6 NC_006151.1 + 103136 0.75 0.123458
Target:  5'- cGCGCgGCCaagcgCGCCUCGGCCGacgccgaccUGGcGCGCu -3'
miRNA:   3'- -CGCG-CGGa----GCGGGGCCGGU---------ACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 103029 0.66 0.494927
Target:  5'- -aGCGCCUCgggGCCugguucgcgcugCUGGCCGa-GGCGCa -3'
miRNA:   3'- cgCGCGGAG---CGG------------GGCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102944 0.66 0.494927
Target:  5'- cGCGCGCUggacgcggCGCCCgCcGCCcacgacGGCGCg -3'
miRNA:   3'- -CGCGCGGa-------GCGGG-GcCGGuac---CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102815 0.73 0.178824
Target:  5'- gGCGCGCaguacagCGCCaaGGCCAUGcugauggaccgcaacGGCGCg -3'
miRNA:   3'- -CGCGCGga-----GCGGggCCGGUAC---------------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102574 0.66 0.450874
Target:  5'- cGCGCGCCcgCGCgcgcgaguCCCGcgaGUCGcagcGGGCGCu -3'
miRNA:   3'- -CGCGCGGa-GCG--------GGGC---CGGUa---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102525 0.66 0.485954
Target:  5'- gGCgGCGUCUaCGaCCagaCGGUgGUGGcGCGCg -3'
miRNA:   3'- -CG-CGCGGA-GC-GGg--GCCGgUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 102407 0.74 0.157263
Target:  5'- gGCGCGCgUCGCgcggCCCgcgaacgaGGCCAUgcaccGGGCGCu -3'
miRNA:   3'- -CGCGCGgAGCG----GGG--------CCGGUA-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102370 0.71 0.228844
Target:  5'- aCGCGUCcgCGCCCgUGGCCAagcuGGCGCu -3'
miRNA:   3'- cGCGCGGa-GCGGG-GCCGGUac--CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102238 0.73 0.1857
Target:  5'- cGUGCGCCgUCGCCgCGcucuucgaGCCcauccUGGGCGCg -3'
miRNA:   3'- -CGCGCGG-AGCGGgGC--------CGGu----ACCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.