miRNA display CGI


Results 141 - 160 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 101843 0.73 0.168935
Target:  5'- cGC-CGCCccCGCCCCGGCacccgGcGGCGCa -3'
miRNA:   3'- -CGcGCGGa-GCGGGGCCGgua--C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 101654 0.66 0.477059
Target:  5'- cCGUGCCcgCGCUCuaCGG-CGUGGGCGa -3'
miRNA:   3'- cGCGCGGa-GCGGG--GCCgGUACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 101544 0.73 0.190115
Target:  5'- gGCGCGCCUgCGCCCggCGGaCGUGuacGCGCa -3'
miRNA:   3'- -CGCGCGGA-GCGGG--GCCgGUACc--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 101423 0.67 0.40019
Target:  5'- aGCGCGCCgaGUCCUucacgcuGGUCGUGgucGGCGCc -3'
miRNA:   3'- -CGCGCGGagCGGGG-------CCGGUAC---CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 101393 0.75 0.126509
Target:  5'- cGCGCGCCuucuUCGa--CGGCCucUGGGCGCa -3'
miRNA:   3'- -CGCGCGG----AGCgggGCCGGu-ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 100931 0.66 0.477059
Target:  5'- cGCGgGCg-UGCCCCuGCUcgcgcaaacGUGGGUGCc -3'
miRNA:   3'- -CGCgCGgaGCGGGGcCGG---------UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 100584 0.66 0.485954
Target:  5'- gGC-CGCCacCGUCCugCGGcCCGUGGaGCGCu -3'
miRNA:   3'- -CGcGCGGa-GCGGG--GCC-GGUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 100415 0.67 0.442322
Target:  5'- uGCGCGCCgacgcgggggCGCUgCGcGgCGUGauGGCGCa -3'
miRNA:   3'- -CGCGCGGa---------GCGGgGC-CgGUAC--CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 100193 0.66 0.494927
Target:  5'- cGgGCGaCCUgcuggacucgaUGgCCaCGGCCGcGGGCGCc -3'
miRNA:   3'- -CgCGC-GGA-----------GCgGG-GCCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 99889 0.67 0.433863
Target:  5'- cGCGCGgaCCUgGCgCaGGUgcugaCGUGGGCGCg -3'
miRNA:   3'- -CGCGC--GGAgCGgGgCCG-----GUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 99687 0.68 0.362205
Target:  5'- uGCGCGCCgacgGCgCCGGggagacgcCCAUGgaGGCGCc -3'
miRNA:   3'- -CGCGCGGag--CGgGGCC--------GGUAC--CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 99536 0.83 0.03598
Target:  5'- cCGCGCC-CGCCCaCGGagcaCGUGGGCGCg -3'
miRNA:   3'- cGCGCGGaGCGGG-GCCg---GUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 99300 0.69 0.337358
Target:  5'- aGCGCGCCgugcuggaccgcgCGCCCCG-CCugacGGacGCGCa -3'
miRNA:   3'- -CGCGCGGa------------GCGGGGCcGGua--CC--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 99227 0.75 0.12963
Target:  5'- -aGCGCCUCGCCgCUgcaGGUCGUGGagGCGCu -3'
miRNA:   3'- cgCGCGGAGCGG-GG---CCGGUACC--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 99116 0.7 0.274035
Target:  5'- gGCGUGCUggCGCUgCUGGacCCcgGGGCGCa -3'
miRNA:   3'- -CGCGCGGa-GCGG-GGCC--GGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 99066 0.68 0.354766
Target:  5'- uGCGCGagCUgCGCCCgGGCaccGuGGCGCg -3'
miRNA:   3'- -CGCGCg-GA-GCGGGgCCGguaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 99027 0.68 0.347436
Target:  5'- uGCGCGUCUCcgcgGCCCuCGcGCacgGGGaCGCg -3'
miRNA:   3'- -CGCGCGGAG----CGGG-GC-CGguaCCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 98677 0.66 0.448299
Target:  5'- aCGUccugGCCgCGCCCCGcGUCGUGcccccggagcagacGGCGCg -3'
miRNA:   3'- cGCG----CGGaGCGGGGC-CGGUAC--------------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 98631 0.72 0.194166
Target:  5'- uGCGcCGCCUUcgacgagGCCCUGGC---GGGCGCg -3'
miRNA:   3'- -CGC-GCGGAG-------CGGGGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 98382 0.66 0.485954
Target:  5'- cGCGCGCUgCG-CCUGGCCugccGCGCc -3'
miRNA:   3'- -CGCGCGGaGCgGGGCCGGuaccCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.