miRNA display CGI


Results 101 - 120 of 468 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 117295 0.66 0.476174
Target:  5'- cGCGCGCgagcugcucggcgCUCGCCac-GCCGaGGGCGg -3'
miRNA:   3'- -CGCGCG-------------GAGCGGggcCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 82251 0.66 0.474406
Target:  5'- cGCGCaggccgaggaagGCCUCGCCCagCgucacguugaagacGGCCGcgGGGCaGCg -3'
miRNA:   3'- -CGCG------------CGGAGCGGG--G--------------CCGGUa-CCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 104188 0.66 0.468246
Target:  5'- cGCGCGCUcggCGCCaacgCCGaGaCCGUGaccacGGCGCu -3'
miRNA:   3'- -CGCGCGGa--GCGG----GGC-C-GGUAC-----CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 96206 0.66 0.468246
Target:  5'- gGCGcCGCgUCGCCguggcggCGGCCGcggcGaGGCGCa -3'
miRNA:   3'- -CGC-GCGgAGCGGg------GCCGGUa---C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 87525 0.66 0.468246
Target:  5'- cCGCGCC-CGCCUCGGCCccccaGcCGCc -3'
miRNA:   3'- cGCGCGGaGCGGGGCCGGuacc-C-GCG- -5'
29375 5' -65.6 NC_006151.1 + 57244 0.66 0.477059
Target:  5'- cGCGCgGCCUCggcguccgcgcgGCCCucgaCGGCCucgcgcagcaGGGCGUc -3'
miRNA:   3'- -CGCG-CGGAG------------CGGG----GCCGGua--------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 101654 0.66 0.477059
Target:  5'- cCGUGCCcgCGCUCuaCGG-CGUGGGCGa -3'
miRNA:   3'- cGCGCGGa-GCGGG--GCCgGUACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 90469 0.66 0.485954
Target:  5'- aGCGCGCagCGCCagcaUGGCUcgccgGGGCGg -3'
miRNA:   3'- -CGCGCGgaGCGGg---GCCGGua---CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 75132 0.66 0.485954
Target:  5'- gGCG-GCCggCGgCgCGGCCcagcgcGGGCGCa -3'
miRNA:   3'- -CGCgCGGa-GCgGgGCCGGua----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 37866 0.66 0.485954
Target:  5'- cCGCGCCgCGgacCCCCGcGCCG-GGGagGCg -3'
miRNA:   3'- cGCGCGGaGC---GGGGC-CGGUaCCCg-CG- -5'
29375 5' -65.6 NC_006151.1 + 20754 0.66 0.485954
Target:  5'- gGCGCGCCUCcaCCgCGGCgGacgcgcgccGGGCGa -3'
miRNA:   3'- -CGCGCGGAGc-GGgGCCGgUa--------CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 17960 0.66 0.485954
Target:  5'- -gGCGCC-CGCCugCCGGCguccCAcGcGGCGCa -3'
miRNA:   3'- cgCGCGGaGCGG--GGCCG----GUaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 10863 0.66 0.485954
Target:  5'- ----cCCUCGCCCCGGCCccccggcuuGGUGCc -3'
miRNA:   3'- cgcgcGGAGCGGGGCCGGuac------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 2165 0.66 0.485954
Target:  5'- cCGU-CCUCGCCggggCCGGCCcc-GGCGCc -3'
miRNA:   3'- cGCGcGGAGCGG----GGCCGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 134273 0.66 0.485954
Target:  5'- -gGCGauuguaGCCCCgGGCCGcccacGGGCGCa -3'
miRNA:   3'- cgCGCggag--CGGGG-CCGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102525 0.66 0.485954
Target:  5'- gGCgGCGUCUaCGaCCagaCGGUgGUGGcGCGCg -3'
miRNA:   3'- -CG-CGCGGA-GC-GGg--GCCGgUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 35215 0.66 0.485061
Target:  5'- cGCGCGCCcauUgGCCCgggcgagccgagaUGGCCGccgcGGGgGCc -3'
miRNA:   3'- -CGCGCGG---AgCGGG-------------GCCGGUa---CCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 128606 0.66 0.484169
Target:  5'- cGCGCGCCacccgcggcgugCGCCCCaGGUgGcGGaccacGCGCg -3'
miRNA:   3'- -CGCGCGGa-----------GCGGGG-CCGgUaCC-----CGCG- -5'
29375 5' -65.6 NC_006151.1 + 106207 0.66 0.480608
Target:  5'- gGUGCGgCUCGCCCUccccgaccugaugguGGCCGcgGuGGCcgGCg -3'
miRNA:   3'- -CGCGCgGAGCGGGG---------------CCGGUa-C-CCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 78628 0.66 0.480608
Target:  5'- aCGCGCCggaCGCCgacgcgUgcgagcugguggaggCGGCCG-GGGCGCg -3'
miRNA:   3'- cGCGCGGa--GCGG------G---------------GCCGGUaCCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.