miRNA display CGI


Results 121 - 140 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 33277 0.66 0.468246
Target:  5'- gGCG-GCCaUCGCCCgacccuucCCcgGGGCGCg -3'
miRNA:   3'- -CGCgCGG-AGCGGGgcc-----GGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 33222 0.66 0.468246
Target:  5'- aCGCGgggCGCCCCGGC---GGGCGg -3'
miRNA:   3'- cGCGCggaGCGGGGCCGguaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 39773 0.66 0.477059
Target:  5'- gGCGcCGCCUUcggGCaCCgcgCGGCCAaccgcUGGGgGCu -3'
miRNA:   3'- -CGC-GCGGAG---CG-GG---GCCGGU-----ACCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 54448 0.66 0.477059
Target:  5'- -gGCGCC-CGCCgUGGCCGa--GCGCc -3'
miRNA:   3'- cgCGCGGaGCGGgGCCGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58916 0.66 0.477059
Target:  5'- aCGCGCUccccCGCCgCGGCCGUcauaGCGCc -3'
miRNA:   3'- cGCGCGGa---GCGGgGCCGGUAcc--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 10863 0.66 0.485954
Target:  5'- ----cCCUCGCCCCGGCCccccggcuuGGUGCc -3'
miRNA:   3'- cgcgcGGAGCGGGGCCGGuac------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 2165 0.66 0.485954
Target:  5'- cCGU-CCUCGCCggggCCGGCCcc-GGCGCc -3'
miRNA:   3'- cGCGcGGAGCGG----GGCCGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 134273 0.66 0.485954
Target:  5'- -gGCGauuguaGCCCCgGGCCGcccacGGGCGCa -3'
miRNA:   3'- cgCGCggag--CGGGG-CCGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102525 0.66 0.485954
Target:  5'- gGCgGCGUCUaCGaCCagaCGGUgGUGGcGCGCg -3'
miRNA:   3'- -CG-CGCGGA-GC-GGg--GCCGgUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 35215 0.66 0.485061
Target:  5'- cGCGCGCCcauUgGCCCgggcgagccgagaUGGCCGccgcGGGgGCc -3'
miRNA:   3'- -CGCGCGG---AgCGGG-------------GCCGGUa---CCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 128606 0.66 0.484169
Target:  5'- cGCGCGCCacccgcggcgugCGCCCCaGGUgGcGGaccacGCGCg -3'
miRNA:   3'- -CGCGCGGa-----------GCGGGG-CCGgUaCC-----CGCG- -5'
29375 5' -65.6 NC_006151.1 + 106207 0.66 0.480608
Target:  5'- gGUGCGgCUCGCCCUccccgaccugaugguGGCCGcgGuGGCcgGCg -3'
miRNA:   3'- -CGCGCgGAGCGGGG---------------CCGGUa-C-CCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 78628 0.66 0.480608
Target:  5'- aCGCGCCggaCGCCgacgcgUgcgagcugguggaggCGGCCG-GGGCGCg -3'
miRNA:   3'- cGCGCGGa--GCGG------G---------------GCCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 101654 0.66 0.477059
Target:  5'- cCGUGCCcgCGCUCuaCGG-CGUGGGCGa -3'
miRNA:   3'- cGCGCGGa-GCGGG--GCCgGUACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 57244 0.66 0.477059
Target:  5'- cGCGCgGCCUCggcguccgcgcgGCCCucgaCGGCCucgcgcagcaGGGCGUc -3'
miRNA:   3'- -CGCG-CGGAG------------CGGG----GCCGGua--------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 141861 0.66 0.477059
Target:  5'- uCGCGCCgCGCCCUcuggugccggagGGCC--GGGCa- -3'
miRNA:   3'- cGCGCGGaGCGGGG------------CCGGuaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 136213 0.66 0.477059
Target:  5'- gGCGCGCUUCgGCCCCGaggagaagacGCU---GGUGCu -3'
miRNA:   3'- -CGCGCGGAG-CGGGGC----------CGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 100931 0.66 0.477059
Target:  5'- cGCGgGCg-UGCCCCuGCUcgcgcaaacGUGGGUGCc -3'
miRNA:   3'- -CGCgCGgaGCGGGGcCGG---------UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 88387 0.66 0.477059
Target:  5'- aGCGCGuCCgcggCGUCCgCGGCCGcGaGGCcCg -3'
miRNA:   3'- -CGCGC-GGa---GCGGG-GCCGGUaC-CCGcG- -5'
29375 5' -65.6 NC_006151.1 + 81791 0.66 0.477059
Target:  5'- gGCGCGCCcgUCGaagagCCCGGCgAagcccgcgGGGCaGCc -3'
miRNA:   3'- -CGCGCGG--AGCg----GGGCCGgUa-------CCCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.